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v1.0.1 Release

ยท 4 min read

This release of JBrowse Web includes several improvements and bug fixes, including:

  • A new sequence track renderer that includes translation frames
  • The addition of session connections
  • A new track selector icon
  • Improvements to feature details widgets
  • And more! See details below.

Downloads#

To install JBrowse 2 for the web, you can download the link above, or you can use the JBrowse CLI to automatically download the latest version. See the JBrowse web quick start for more details.

See "Packages in this release" in the changelog for links to packages published on NPM.

v1.0.1 (2020-11-25)#

Packages in this release

PackageDownload
@jbrowse/corehttps://www.npmjs.com/package/@jbrowse/core
@jbrowse/development-toolshttps://www.npmjs.com/package/@jbrowse/development-tools
@jbrowse/plugin-alignmentshttps://www.npmjs.com/package/@jbrowse/plugin-alignments
@jbrowse/plugin-bedhttps://www.npmjs.com/package/@jbrowse/plugin-bed
@jbrowse/plugin-breakpoint-split-view
@jbrowse/plugin-circular-view
@jbrowse/plugin-confighttps://www.npmjs.com/package/@jbrowse/plugin-config
@jbrowse/plugin-data-managementhttps://www.npmjs.com/package/@jbrowse/plugin-data-management
@jbrowse/plugin-dotplot-view
@jbrowse/plugin-filtering
@jbrowse/plugin-gff3https://www.npmjs.com/package/@jbrowse/plugin-gff3
@jbrowse/plugin-hic
@jbrowse/plugin-legacy-jbrowse
@jbrowse/plugin-linear-comparative-view
@jbrowse/plugin-linear-genome-viewhttps://www.npmjs.com/package/@jbrowse/plugin-linear-genome-view
@jbrowse/plugin-lollipop
@jbrowse/plugin-menus
@jbrowse/plugin-protein
@jbrowse/plugin-rdf
@jbrowse/plugin-sequencehttps://www.npmjs.com/package/@jbrowse/plugin-sequence
@jbrowse/plugin-spreadsheet-view
@jbrowse/plugin-sv-inspector
@jbrowse/plugin-svghttps://www.npmjs.com/package/@jbrowse/plugin-svg
@jbrowse/plugin-trackhub-registry
@jbrowse/plugin-variantshttps://www.npmjs.com/package/@jbrowse/plugin-variants
@jbrowse/plugin-wigglehttps://www.npmjs.com/package/@jbrowse/plugin-wiggle
@jbrowse/clihttps://www.npmjs.com/package/@jbrowse/cli
@jbrowse/desktop
@jbrowse/protein-widget
@jbrowse/react-linear-genome-viewhttps://www.npmjs.com/package/@jbrowse/react-linear-genome-view
@jbrowse/web

๐Ÿš€ Enhancement#

๐Ÿ› Bug Fix#

  • core
    • #1491 Fix ability to add a PAF synteny track with add-track (@cmdcolin)
    • #1470 Avoid rendering the literal string 'null' in the feature details (@cmdcolin)
  • Other
    • #1489 Fix long read vs ref CIGAR rendering for horizontally flipped synteny view (@cmdcolin)
    • #1460 Add support for more bigBed subtypes and fallback for unsupported types (@peterkxie)
    • #1472 Wait on assemblies that are being tracked by the assemblyManager only (@cmdcolin)
    • #1466 Avoid rendering the display and renderer settings in the about this track dialog (@cmdcolin)
    • #1461 Fix usage of jbrowse-cli on node 10.9 related to fs.promises (@cmdcolin)
    • #1452 Bug: search box disappears from LGV header on smaller widths (@teresam856)
    • #1432 Make global variables window.JBrowseSession and window.JBrowseRootModel available in jbrowse-web (@teresam856)
    • #1431 Fix connection tracks not showing up in track selector (@garrettjstevens)
    • #1428 Fix the listVersions behavior of the jbrowse-cli returning duplicate entries (@cmdcolin)
    • #1422 Fix crash from empty ALT field in VCF (@cmdcolin)
    • #1413 Fix ability to add CRAM tracks using the web based add-track GUI (@cmdcolin)

๐Ÿ“ Documentation#

๐Ÿ  Internal#

Committers: 5#