JBrowse 1.16.11 maintenance release
Hi all,
This is a small maintanence release that fixes an issue that was seen with very long CRAM reads and an issue that was seen with some users installing with setup.sh producing an error. Thanks to everyone for their bug reports and requests and for being patient with jbrowse 1 releases as we speed ahead with jbrowse 2!
- JBrowse-1.16.11.zip - minified release
- JBrowse-1.16.11-dev.zip - use this if you modify jbrowse source code or use plugins
- JBrowse-1.16.11-desktop-win32-x64.zip
- JBrowse-1.16.11-desktop-linux-x64.zip
- JBrowse-1.16.11-desktop-darwin-x64.zip
Minor improvements
Add optional track label field for RegexSequenceSearch (issue #1553, @cmdcolin, @Rhinogradentia)
Bump @gmod/tabix for textdecoder speedup for very large tabix files (@arpanda, @cmdcolin, issue #1569)
Increase GFF3Tabix chunkSizeLimit to avoid it being hit on relatively small files
Bug fixes
Bump @gmod/cram for fix for ultra long reads (https://github.com/GMOD/cram-js/pull/84)
Fix issue that some users were seeing with "Commit hash required" when running setup.sh. Thanks to @GFJHogue and @hans-vg for reporting (issue #1555)
Bump @gmod/bam which fixes some unsigned BAM tags being reported with a negative number
Bump @gmod/bam and @gmod/tabix for and some fixes with reg2bins and chunk merging for large chromosomes e.g. wheat. Thanks to @jrobinso for reporting (https://github.com/GMOD/tabix-js/issues/118)