JBrowse 1

JBrowse 1.15.3 maintenance release

August 29, 2018

JBrowse 1.15.3 has been released! This contains an bugfix introduced in 1.15.0 where typing a reference sequence name in the search bar did not navigate to it properly. It also contains a cool feature where "ultra minimal configs" can be specified by simply specifying a track label and urlTemplate

For example, a directory containing indexed files like VCF, BAM, GFF3 tabix, and indexed FASTA can have a config simply like this in tracks.conf

[GENERAL]
refSeqs=volvox.fa.fai
[tracks.refseq]
urlTemplate=volvox.fa
[tracks.bam]
urlTemplate=volvox-sorted.bam
[tracks.cram]
urlTemplate=volvox-sorted.cram
[tracks.vcf]
urlTemplate=volvox.filtered.vcf.gz
[tracks.gff]
urlTemplate=volvox.sort.gff3.gz
[tracks.bed]
urlTemplate=volvox.sort.bed.gz

Enjoy browsing!

Minor improvements

  • Add ability to automatically deduce the storeClass and trackType of files based on the file extension of urlTemplate. This allows very minimal configs where only track label and urlTemplate can be specified. (issue #1189, @cmdcolin)

Bug fixes

  • Fixed an issue with servers that use HTTP Basic Authentication on certain browsers, notably some Chromium, Firefox 60 and earlier, and Safari. Thanks to Keiran Raine for reporting and @cmdcolin for debugging. (issue #1186, @rbuels)

  • Fix issue where searching for reference sequence names would not be navigate to the typed in reference sequence (issue #1193, @cmdcolin)

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