JBrowse 1

JBrowse 1.9.2 maintenance release

May 2, 2013

JBrowse 1.9.2 has been released, with fixes for a number of smaller issues present in the 1.9.1 release.

Files for download:

  • JBrowse-1.9.2.zip - 5.0M file SHA1 ad3f510021eebbc8e0e5f6e4cfb6f2def1a63400

  • JBrowse-1.9.2-dev.zip - 28.6M file SHA1 91eec960ffb89a9496fe670b7512b3ccb1ece587 Changes in this release:

  • Fixed bug in which JBrowse could not properly display all data in BAM files with reference sequence name sections bigger than 64KB. Thanks to GitHub user lfgu for pointing this out (issue #245).

  • Made REST feature store backend less sensitive more tolerant of stringification of start, end, strand, and score in feature JSON. Thanks to Matt Bomhoff for pointing this out.

  • Fixed bug in which URLs for plugin resources were not assembled relative to the browserRoot config variable. Thanks to Matt Bomhoff for pointing this out.

  • Fixed bug in which missing fields in a VCF variant's genotype prevented display of a variant's details. Thanks to Jillian Rowe for pointing this out.

  • Fixed some minor issues related to the handling of empty BigWig files. Thanks to Nathan Boley for pointing this out (issue #252).

  • The trackSelector.type global config variable can now contain fully-qualified class names, so plugins can contain their own tracklist classes. Thanks to Matt Bomhoff for pointing this out.

  • Moved the "Select tracks" tab used to open the faceted track selector downward, so that it does not block access to the left side of the reference sequence overview.

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