JBrowse 1

JBrowse 1.16.2 maintenance release

January 31, 2019

I'm happy to announce the release of 1.16.2, it is a smaller maintenance release. It contains several fixes including for CSI in BAM files, and several other small fixes. Thanks to everyone for communicating requests and bug reports

Minor improvements

  • Allow configuring the cache busting behavior for adding random ?v= value to config file requests. This can be configured in index.html. Thanks to user @sandilyaamit for reporting, this is actually important to disable when using Amazon presigned URLs (@cmdcolin)

  • Adds fixBounds config for XYPlot tracks which can be set to false to disable the behavior of rounding up or down on the min_score/max_score variables for the ruler. Thanks to @scottcain for the suggestion (issue #1306, @cmdcolin)

Bug fixes

  • Fix ability to use CSI indexes with BAM files since 1.16.0 (@cmdcolin)

  • Fix ability to read some CRAM files with unmapped mates (@cmdcolin)

  • Fix issue with the browser loading NaN locations on startup (@cmdcolin)

  • Add fix for exporting GFF3 for newer browsers that have Array.values() enabled. Thanks to Scott Cain for reporting (@cmdcolin)

  • Improve error message when refSeqs=file.fai config fails to load (@cmdcolin)

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