JBrowse 1.15.4 has been released! This release allows you to use bgzip indexed FASTA, adds a new
categoryOrder config for sorting the Hierarchical track selector, and more!
Thanks to everyone for their feature requests and bug reports, and enjoy!
- JBrowse-1.15.4.zip - minified release
- JBrowse-1.15.4-dev.zip - use this if you modify jbrowse source code or use plugins
Added support for bgzipped indexed FASTA. To use, bgzip your FASTA with
bgzip -i file.fa, which generates file.fa.gz and file.fa.gzi and then use
samtools faidx file.fa.gz. If you specify the .fa.gz in the track config e.g.
"urlTemplate": "file.fa.gz"and have all three files in your data directory, then they will automatically be detected (issue #1152, issue #1200, @cmdcolin)
topLevelFeaturesPercentconfiguration variable that can be used to correct feature statistics estimates when
topLevelFeaturesis being used for a track, or when it contains deeply-nested features. This configuration variable is currently only used by BAM, BEDTabix, GFF3Tabix, and VCFTabix stores. (issue #1147, issue #1209, @rbuels)
Tabix-based data stores use a new storage backend based on the
@gmod/tabixnpm module. Users should see some modest performance improvements for Tabix-based tracks. (issue #1195, issue #1209, @rbuels)
categoryOrderconfig to allow sorting the categories in the Hierarchical track selector. For example,
categoryOrder=VCF,Quantitative/Density,BAM. Note that we specify a lowest level subcategory e.g. Quantitative/Density to sort the parent category Quantitative to a position (issue #1203, issue #1208, @cmdcolin)
Fixed a bug in which feature labels would sometimes be repeated across the view, in the wrong locations. (@rbuels)
Fixed error where a chunk size limit error during histogram display would not be displayed (@cmdcolin)
Added check for PCR duplicates for CRAM features (@cmdcolin)