JBrowse 1

JBrowse 1.9.6 maintenance release

June 18, 2013

JBrowse 1.9.6 has been released, with a few more bug fixes and a new --workdir option for generate-names.pl.

Files for download:

  • JBrowse-1.9.6.zip - 5.1M file SHA1 2d09a47a57c314ed728ae49db9998a6780ad6609

  • JBrowse-1.9.6-dev.zip - 26M file SHA1 115abb36a78df4307c87d02b5093f88eb8f43f28 Changes in this release:

  • Fixed a bug in which the reference sequence selection dropdown menu did not work for purely numeric reference sequence names. Thanks to Matt Bomhoff for pointing this out.

  • Fixed a bug with some types of BAM files in which not all BAM features would be displayed. Thanks to Ignazio Carbone for pointing this out. (issue #276).

  • Fixed bug in which File->Open failed to open GFF3 files with embedded sequences in a FASTA section.

  • Added a --workdir option to generate-names.pl to allow name index building on a faster filesystem than the one that will ultimately store the name index. Thanks to Alexie Papanicolaou for suggesting this. (issue #273).

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