This release contains changes that help people rendering SNPs from reads with multiple CIGAR skips, e.g. Iso-Seq. It also includes a modest speedup for long reads and automatic generation of MD tags for BAM, and more. Please see the changelog below!
- JBrowse-1.16.10.zip - minified release
- JBrowse-1.16.10-dev.zip - use this if you modify jbrowse source code or use plugins
Added an optimization for BAM that helps for long reads especially (@cmdcolin)
Added generation of the MD tag if none is specified in BAM (issue #1022, @cmdcolin)
replaceRefRenameglobal configs for extending and replacing ref renaming functionality respectively. Ref renaming helps things like chrM and chrMT to be loaded onto the same chromosome in jbrowse (@cmdcolin, issue #1506)
Added support for a -f option for setup.sh. This option causes setup to skip installing perl prerequisites and setting up sample data. It is primarily intended to support faster builds in a Docker context. (@scottcain)