Breakpoint split view
One structural variant across two regions.
View source — 42 lines
import { JBrowse } from '@jbrowse/react-app2'
const base = 'https://jbrowse.org/code/jb2/main/test_data/volvox'
const assemblies = [
{ name: 'volvox', uri: 'https://jbrowse.org/genomes/volvox/volvox.2bit' },
]
const tracks = [
{
trackId: 'volvox_sv_cram',
name: 'volvox-sv (cram)',
uri: `${base}/volvox-sv.cram`,
category: ['Alignments'],
},
]
export default function BreakpointSplit() {
return (
<JBrowse
assemblies={assemblies}
tracks={tracks}
views={[
{
type: 'BreakpointSplitView',
views: [
{
loc: 'ctgA:1-5000',
assembly: 'volvox',
tracks: ['volvox_sv_cram'],
},
{
loc: 'ctgB:1-5000',
assembly: 'volvox',
tracks: ['volvox_sv_cram'],
},
],
},
]}
/>
)
}