JBrowse Circular Genome View
A whole-genome circular view as a React component.
Getting started
- Volvox structural variantsassembly, tracks and view as props.
- Tracks as an id and a uriThe extension picks the track type and the adapter.
- Show and hide a trackToggle a track from your own button.
- Put the session in the URLencodeSession and decodeSession, for a sharable link.
- Dark themeA Material UI palette, through configuration.theme.
- Inline pluginA Plugin subclass that adds a view menu item.
- Web workerMove data parsing off the main thread.
- Without ReactcreateCircularGenomeView mounts into an element and hands back a controller.
Real-world demos
- Human structural variants (hg19)HG002 PacBio breakend structural variants on hg19.
- Human and mouse on one circleTwo genomes on one circle, their liftOver chain as ribbons.
- Oat subgenomes on one circleA hexaploid's homoeolog blocks between its own chromosomes.
- Gene density as a ringA bigWig of gene density drawn as a ring.
- Gene density, declared as marksA LinearMarkDisplay bar mark, its colour a viridis ramp.