Class NCList
After
Alekseyenko, A., and Lee, C. (2007). Nested Containment List (NCList): A new algorithm for accelerating interval query of genome alignment and interval databases. Bioinformatics, doi:10.1093/bioinformatics/btl647http://bioinformatics.oxfordjournals.org/cgi/content/abstract/btl647v1
Defined in: NCList.js.
Constructor Attributes | Constructor Name and Description |
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NCList()
Nested containment list.
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Method Attributes | Method Name and Description |
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binarySearch(arr, item, getter)
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fill(intervals, attrs)
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histogram(from, to, numBins, callback)
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importExisting(nclist, attrs, baseURL, lazyUrlTemplate, lazyClass)
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iterate(from, to, fun, postFun)
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iterHelper(arr, from, to, fun, finish, inc, searchGet, testGet, path)
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Method Detail
binarySearch(arr, item, getter)
- Parameters:
- arr
- item
- getter
fill(intervals, attrs)
- Parameters:
- intervals
- attrs
histogram(from, to, numBins, callback)
- Parameters:
- from
- to
- numBins
- callback
importExisting(nclist, attrs, baseURL, lazyUrlTemplate, lazyClass)
- Parameters:
- nclist
- attrs
- baseURL
- lazyUrlTemplate
- lazyClass
iterate(from, to, fun, postFun)
- Parameters:
- from
- to
- fun
- postFun
iterHelper(arr, from, to, fun, finish, inc, searchGet, testGet, path)
- Parameters:
- arr
- from
- to
- fun
- finish
- inc
- searchGet
- testGet
- path