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Classes


Class NCList

After

  Alekseyenko, A., and Lee, C. (2007).
  Nested Containment List (NCList): A new algorithm for accelerating
     interval query of genome alignment and interval databases.
  Bioinformatics, doi:10.1093/bioinformatics/btl647
http://bioinformatics.oxfordjournals.org/cgi/content/abstract/btl647v1
Defined in: NCList.js.

Class Summary
Constructor Attributes Constructor Name and Description
 
NCList()
Nested containment list.
Method Summary
Method Attributes Method Name and Description
 
binarySearch(arr, item, getter)
 
fill(intervals, attrs)
 
histogram(from, to, numBins, callback)
 
importExisting(nclist, attrs, baseURL, lazyUrlTemplate, lazyClass)
 
iterate(from, to, fun, postFun)
 
iterHelper(arr, from, to, fun, finish, inc, searchGet, testGet, path)
Class Detail
NCList()
Nested containment list.
Method Detail
binarySearch(arr, item, getter)
Parameters:
arr
item
getter

fill(intervals, attrs)
Parameters:
intervals
attrs

histogram(from, to, numBins, callback)
Parameters:
from
to
numBins
callback

importExisting(nclist, attrs, baseURL, lazyUrlTemplate, lazyClass)
Parameters:
nclist
attrs
baseURL
lazyUrlTemplate
lazyClass

iterate(from, to, fun, postFun)
Parameters:
from
to
fun
postFun

iterHelper(arr, from, to, fun, finish, inc, searchGet, testGet, path)
Parameters:
arr
from
to
fun
finish
inc
searchGet
testGet
path

Documentation generated by JsDoc Toolkit 2.4.0 on Thu Jun 14 2012 17:43:46 GMT-0400 (EDT)