JBrowse 2 genome hubs
This page has a variety of JBrowse 2 genome browsers created primarily by bulk-loading data from the UCSC Genome Browser. For more information, see the about page.
Main genome browsers
Here is a short list of human and mouse genomes, for more species click here
| Name | Scientific name | Organism | Description | JBrowse | UCSC |
|---|---|---|---|---|---|
| hg19 (info) | Homo sapiens | Human | Feb. 2009 (GRCh37/hg19) | JBrowse | UCSC |
| hg38 (info) | Homo sapiens | Human | Dec. 2013 (GRCh38/hg38) | JBrowse | UCSC |
| hs1 (info) | Homo sapiens | Human | Jan. 2022 (T2T CHM13v2.0/hs1) | JBrowse | UCSC |
| mm10 (info) | Mus musculus | Mouse | Dec. 2011 (GRCm38/mm10) | JBrowse | UCSC |
| mm39 (info) | Mus musculus | Mouse | Jun. 2020 (GRCm39/mm39) | JBrowse | UCSC |
- Click here for a more complete listing
- Click here for a single JBrowse 2 instance containing ALL the species
Note that some tracks that are available at UCSC are not yet available here, see unavailable tracks .
GenArk browsers
We also created JBrowse 2 instances based on the UCSC GenArk browser resources, which is an effort to create genome browsers for numerous plant, animal, and microbial species. See more below
Species categories:
| hub gateway | description |
|---|---|
| primates | NCBI primate genomes |
| mammals | NCBI mammal genomes |
| birds | NCBI bird genomes |
| fish | NCBI fish genomes |
| vertebrate | NCBI vertebrate genomes |
| invertebrate | NCBI invertebrate genomes |
| fungi | NCBI fungi genomes |
| plants | NCBI plant genomes |
| viral | NCBI viral genomes |
| bacteria | NCBI bacteria genomes |
Project collections
| hub gateway | description |
|---|---|
| VGP | Vertebrate Genome Project |
| CCGP | The California Conservation Genomics Project |
| HPRC | Human Pangenome Reference Consortium |
| BRC | BRC Analytics - Bioinformatics Research Center (VEuPathDB and others) |
| globalReference | Global Human Reference genomes, January 2020 |
| legacy | NCBI genomes legacy/superseded by newer versions |