JBrowse 2 Plugin Store

MsaView

Colin Diesh

Apache License 2.0

https://github.com/GMOD/jbrowse-plugin-msaview

Description:

multiple sequence alignment browser plugin for JBrowse 2

GDC

Garrett Stevens, Colin Diesh, Rob Buels, Caroline Bridge

MIT

https://github.com/GMOD/jbrowse-plugin-gdc

Description:

JBrowse 2 plugin for integrating with GDC resources

Quantseq

Elliot Hershberg

Apache License 2.0

https://github.com/GMOD/jbrowse-plugin-quantseq

Description:

External JB2 plugin implementing a QuantitativeSequence track for displaying base-resolution models.

GWAS

Colin Diesh

MIT

https://github.com/cmdcolin/jbrowse-plugin-gwas

Description:

Plugin for displaying GWAS results such as manhattan plot renderings

UCSC

Colin Diesh

MIT

https://github.com/cmdcolin/jbrowse-plugin-ucsc-api

Description:

A JBrowse 2 plugin for accessing the UCSC API

Biothings

Colin Diesh

MIT

https://github.com/cmdcolin/jbrowse-plugin-biothings-api

Description:

Adapts to APIs like mygene.info to get super rich gene annotations

Ideogram

Colin Diesh, Caroline Bridge

Apache License 2.0

https://github.com/cmdcolin/jbrowse-plugin-ideogram

Description:

JBrowse 2 plugin for rendering ideograms

CIVIC

Colin Diesh

Apache License 2.0

https://github.com/cmdcolin/jbrowse-plugin-civic-api

Description:

JBrowse 2 plugin for fetching data from the CIVIC clinical interpretation of cancer variants

ICGC

Caroline Bridge

Apache License 2.0

https://github.com/GMOD/jbrowse-plugin-icgc

Description:

JBrowse 2 plugin to integrate resources from the ICGC

Reactome

Caroline Bridge

Apache License 2.0

https://github.com/GMOD/jbrowse-plugin-reactome

Description:

JBrowse 2 plugin to integrate resources from Reactome

MultilevelLinearView

Caroline Bridge

Apache License 2.0

https://github.com/GMOD/jbrowse-plugin-multilevel-linear-view

Description:

JBrowse 2 plugin that adds a linear genome view that can show multiple zoom levels

TrackHubRegistry

Colin Diesh

Apache License 2.0

https://github.com/cmdcolin/jbrowse-plugin-trackhub-registry

Description:

JBrowse 2 plugin that adds ability to connect to hubs from the trackhub registry. Note: only for use with v2.3.0 or greater

RefGet

Emilio Righi

ISC

https://github.com/emiliorighi/jbrowse-plugin-refget-api

Description:

JBrowse 2 plugin that adds ability to retrieve sequences from refget API compliant servers

Linkout

NAL-i5K

Apache License 2.0

https://github.com/NAL-i5K/jbrowse-plugin-linkout

Description:

JBrowse 2 plugin that links out to feature page based on dbxref

MafViewer

Colin Diesh

MIT

https://github.com/cmdcolin/jbrowse-plugin-mafviewer

Description:

View multiple alignment format (MAF) files as tracks

Protein3d

Colin Diesh

MIT

https://github.com/cmdcolin/jbrowse-plugin-protein3d

Description:

View 3-D protein structures in JBrowse 2