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VcfTabixAdapter

Note: this document is automatically generated from configuration objects in our source code. See Config guide for more info

Source file​

plugins/variants/src/VcfTabixAdapter/configSchema.ts

VcfTabixAdapter - Slots​

slot: vcfGzLocation​

vcfGzLocation: {
      type: 'fileLocation',
      defaultValue: { uri: '/path/to/my.vcf.gz', locationType: 'UriLocation' },
    }

slot: index.indexType​

indexType: {
        model: types.enumeration('IndexType', ['TBI', 'CSI']),
        type: 'stringEnum',
        defaultValue: 'TBI',
      }

slot: index.location​

location: {
        type: 'fileLocation',
        defaultValue: {
          uri: '/path/to/my.vcf.gz.tbi',
          locationType: 'UriLocation',
        },
      }