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SNPCoverageRenderer

Note: this document is automatically generated from configuration objects in our source code. See Config guide for more info

Source file​

plugins/alignments/src/SNPCoverageRenderer/configSchema.ts

SNPCoverageRenderer - Slots​

slot: clipColor​

clipColor: {
      type: 'color',
      description: 'the color of the clipping marker',
      defaultValue: 'red',
    }

slot: indicatorThreshold​

indicatorThreshold: {
      type: 'number',
      description:
        'the proportion of reads containing a insertion/clip indicator',
      defaultValue: 0.4,
    }

slot: drawArcs​

drawArcs: {
      type: 'boolean',
      description: 'Draw sashimi-style arcs for intron features',
      defaultValue: true,
    }

slot: drawInterbaseCounts​

drawInterbaseCounts: {
      type: 'boolean',
      description:
        'draw count "upsidedown histogram" of the interbase events that don\'t contribute to the coverage count so are not drawn in the normal histogram',
      defaultValue: true,
    }

slot: drawIndicators​

drawIndicators: {
      type: 'boolean',
      description:
        'draw a triangular indicator where an event has been detected',
      defaultValue: true,
    }