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SharedVariantDisplay

Note: this document is automatically generated from configuration objects in our source code. See Config guide for more info

Also note: this document represents the config API for the current released version of jbrowse. If you are not using the current version, please cross reference the markdown files in our repo of the checked out git tag

Source code

GitHub page

Docs​

extends

SharedVariantDisplay - Slots​

slot: autoscale​

autoscale: {
        type: 'stringEnum',
        defaultValue: 'local',
        model: types.enumeration('Autoscale type', [
          'global',
          'local',
          'globalsd',
          'localsd',
          'zscore',
        ]),
        description:
          'global/local using their min/max values or w/ standard deviations (globalsd/localsd)',
      }

slot: minimalTicks​

minimalTicks: {
        type: 'boolean',
        defaultValue: false,
        description: 'use the minimal amount of ticks',
      }

slot: minScore​

minScore: {
        type: 'number',
        defaultValue: Number.MIN_VALUE,
        description: 'minimum value for the y-scale',
      }

slot: maxScore​

maxScore: {
        type: 'number',
        description: 'maximum value for the y-scale',
        defaultValue: Number.MAX_VALUE,
      }

slot: numStdDev​

numStdDev: {
        type: 'number',
        description:
          'number of standard deviations to use for autoscale types globalsd or localsd',
        defaultValue: 3,
      }

slot: scaleType​

scaleType: {
        type: 'stringEnum',
        model: types.enumeration('Scale type', ['linear', 'log']),
        description: 'The type of scale to use',
        defaultValue: 'linear',
      }

slot: inverted​

inverted: {
        type: 'boolean',
        description: 'draw upside down',
        defaultValue: false,
      }

SharedVariantDisplay - Derives from​

baseConfiguration: baseLinearDisplayConfigSchema