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LinearSNPCoverageDisplay

Note: this document is automatically generated from configuration objects in our source code. See Config guide for more info

Also note: this document represents the config API for the current released version of jbrowse. If you are not using the current version, please cross reference the markdown files in our repo of the checked out git tag

Source code

GitHub page

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extends

LinearSNPCoverageDisplay - Slots

slot: autoscale

autoscale: {
type: 'stringEnum',
defaultValue: 'local',
model: types.enumeration('Autoscale type', ['local']),
description:
'performs local autoscaling (no other options for SNP Coverage available)',
}

slot: minScore

minScore: {
type: 'number',
defaultValue: Number.MIN_VALUE,
description: 'minimum value for the y-scale',
}

slot: maxScore

maxScore: {
type: 'number',
description: 'maximum value for the y-scale',
defaultValue: Number.MAX_VALUE,
}

slot: scaleType

scaleType: {
type: 'stringEnum',
model: types.enumeration('Scale type', ['linear', 'log']),
description: 'The type of scale to use',
defaultValue: 'linear',
}

slot: inverted

inverted: {
type: 'boolean',
description: 'draw upside down',
defaultValue: false,
}

slot: multiTicks

multiTicks: {
type: 'boolean',
description: 'Display multiple values for the ticks',
defaultValue: false,
}

slot: renderers

renderers: ConfigurationSchema('RenderersConfiguration', {
SNPCoverageRenderer: pluginManager.getRendererType(
'SNPCoverageRenderer',
)!.configSchema,
})

slot: colorBy

colorBy: {
type: 'frozen',
description: 'color scheme to use',
defaultValue: {
type: 'normal',
},
}

slot: filterBy

filterBy: {
type: 'frozen',
description: 'default filters to use',
defaultValue: defaultFilterFlags,
}

LinearSNPCoverageDisplay - Derives from

baseConfiguration: baseLinearDisplayConfigSchema