LinearSNPCoverageDisplay
Note: this document is automatically generated from configuration objects in our source code. See Config guide for more info
Also note: this document represents the config API for the current released version of jbrowse. If you are not using the current version, please cross reference the markdown files in our repo of the checked out git tag
Links
Docs
extends
LinearSNPCoverageDisplay - Slots
slot: autoscale
autoscale: {
type: 'stringEnum',
defaultValue: 'local',
model: types.enumeration('Autoscale type', ['local']),
description:
'performs local autoscaling (no other options for SNP Coverage available)',
}
slot: minScore
minScore: {
type: 'number',
defaultValue: Number.MIN_VALUE,
description: 'minimum value for the y-scale',
}
slot: maxScore
maxScore: {
type: 'number',
description: 'maximum value for the y-scale',
defaultValue: Number.MAX_VALUE,
}
slot: scaleType
scaleType: {
type: 'stringEnum',
model: types.enumeration('Scale type', ['linear', 'log']),
description: 'The type of scale to use',
defaultValue: 'linear',
}
slot: inverted
inverted: {
type: 'boolean',
description: 'draw upside down',
defaultValue: false,
}
slot: multiTicks
multiTicks: {
type: 'boolean',
description: 'Display multiple values for the ticks',
defaultValue: false,
}
slot: renderers
renderers: ConfigurationSchema('RenderersConfiguration', {
SNPCoverageRenderer: pluginManager.getRendererType(
'SNPCoverageRenderer',
)!.configSchema,
})
slot: colorBy
colorBy: {
type: 'frozen',
description: 'color scheme to use',
defaultValue: {
type: 'normal',
},
}
slot: filterBy
filterBy: {
type: 'frozen',
description: 'default filters to use',
defaultValue: defaultFilterFlags,
}
LinearSNPCoverageDisplay - Derives from
baseConfiguration: baseLinearDisplayConfigSchema