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HicRenderer

Note: this document is automatically generated from configuration objects in our source code. See Config guide for more info

Also note: this document represents the config API for the current released version of jbrowse. If you are not using the current version, please cross reference the markdown files in our repo of the checked out git tag

Source code

GitHub page

Docs​

HicRenderer - Slots​

slot: baseColor​

baseColor: {
      type: 'color',
      description: 'base color to be used in the hic alignment',
      defaultValue: '#f00',
    }

slot: color​

color: {
      type: 'color',
      description: 'the color of each feature in a hic alignment',
      defaultValue: 'jexl:interpolate(count,scale)',
      contextVariable: ['count', 'maxScore', 'baseColor', 'scale'],
    }

slot: maxHeight​

maxHeight: {
      type: 'integer',
      description: 'the maximum height to be used in a hic rendering',
      defaultValue: 600,
    }