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Gff3TabixAdapter

Note: this document is automatically generated from configuration objects in our source code. See Config guide for more info

Also note: this document represents the config API for the current released version of jbrowse. If you are not using the current version, please cross reference the markdown files in our repo of the checked out git tag

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Gff3TabixAdapter - Slots​

slot: gffGzLocation​

gffGzLocation: {
      type: 'fileLocation',
      defaultValue: { uri: '/path/to/my.gff.gz', locationType: 'UriLocation' },
    }

slot: index.indexType​

indexType: {
        model: types.enumeration('IndexType', ['TBI', 'CSI']),
        type: 'stringEnum',
        defaultValue: 'TBI',
      }

slot: index.indexType​

location: {
        type: 'fileLocation',
        defaultValue: {
          uri: '/path/to/my.gff.gz.tbi',
          locationType: 'UriLocation',
        },
      }

slot: dontRedispatch​

the Gff3TabixAdapter has to "redispatch" if it fetches a region and features it finds inside that region extend outside the region we requested. you can disable this for certain feature types to avoid fetching e.g. the entire chromosome

dontRedispatch: {
      type: 'stringArray',
      defaultValue: ['chromosome', 'region', 'contig'],
    }