Skip to main content

BigBedAdapter

Note: this document is automatically generated from configuration objects in our source code. See Config guide for more info

Source file​

plugins/bed/src/BigBedAdapter/configSchema.ts

BigBedAdapter - Slots​

slot: bigBedLocation​

bigBedLocation: {
      type: 'fileLocation',
      defaultValue: { uri: '/path/to/my.bb', locationType: 'UriLocation' },
    }

slot: scoreColumn​

scoreColumn: {
      type: 'string',
      description: 'The column to use as a "score" attribute',
      defaultValue: '',
    }

slot: aggregateField​

aggregateField: {
      type: 'string',
      description: 'An attribute to aggregate features with',
      defaultValue: 'geneName',
    }