JBrowse 2 Cancer Resources
A hub of tutorials, plugins, and information regarding cancer data and JBrowse 2
Check out the video tutorial series
Also checkout our written guides.
Download a sample configuration file to quick start using JBrowse 2 for cancer workflows
Includes hg19 and hg38 as default assemblies, the plugins highlighted below, and some sample data for exemplar purposes.
Download the most recent version of JBrowse 2
Available as a desktop application or web application.
JBrowse 2 plugins to connect cancer annotation datasets
This is a hub of plugins that provide an instance of JBrowse 2 access to cancer-associated annotation datasets.
GDC
Garrett Stevens, Colin Diesh, Rob Buels, Caroline Bridge
MIT
Description:
JBrowse 2 plugin for integrating resources from NCI's Genomic Data Commons (GDC).
ICGC
Caroline Bridge
Apache License 2.0
Description:
JBrowse 2 plugin for integrating resources from the International Cancer Genome Consortium (ICGC).
UCSC
Colin Diesh
MIT
Description:
JBrowse 2 plugin for integrating resources from the UCSC API.
Biothings
Colin Diesh
MIT
Description:
JBrowse 2 plugin for adapting the API's from mygene.info and myvariant.info to get super rich gene annotations.
CIVIC
Colin Diesh
Apache License 2.0
Description:
JBrowse 2 plugin for fetching data from the CIVIC clinical interpretation of cancer variants.