We're excited to announce the v1.4.4 release! Some highlights of this release
include:
Text searchingโ
Finally, we have added the ability to search by gene name!
Users will now be able to create their own text indexes with the
jbrowse text-index
command, which creates an index for searching by gene
names, identifiers and descriptions.
GIF showing the process of searching via the location search box of the Linear
Genome View. Try it out yourself here, type your favorite gene name e.g. HER2,
PTEN, or others in the search box
https://jbrowse.org/code/jb2/v1.4.4/?config=test_data%2Fconfig_demo.json&session=share-H3vwqh1BKa&password=xYz9Z
For a quick introduction and a tutorial on how to add this feature to your
JBrowse instance, check out this
quick start
Like most parts of JBrowse, the text searching system is pluggable. Plugin
developers can add new text index adapters to connect JBrowse to other types of
text search services, indexes, or databases.
Users of the @jbrowse/react-linear-genome-view can also enable text searching
functionality, see
https://jbrowse.org/storybook/lgv/v1.4.0/?path=/story/text-searching--page
Note that 1.4.0-1.4.3 had issues during publish, so we moved all release notes
for them to here. Thanks to @bbimber for letting us know about these issues.
Downloadsโ
To install JBrowse 2 for the web, you can download the link above, or you can
use the JBrowse CLI to automatically download the latest version. See the
JBrowse web quick start for more
details.
1.4.4 (2021-09-14)โ
๐ Enhancementโ
- Other
- #2287 Use
react-popper to reduce tooltip lag on pages with many elements
(@cmdcolin)
- #2294 Don't rely on
SVTYPE=BND for breakend split view options and thicker mouseover chords on
circular views (@cmdcolin)
- #2272 Auto adjust
box RefNameAutocomplete width based on refName length
(@cmdcolin)
- #2243 Import
bookmarks functionality for grid bookmark widget
(@cmdcolin)
core
- #2247 New
jbrowse-desktop start screen design
(@cmdcolin)
- #2254 Better error
reporting from web worker and chrom sizes adapter errors
(@cmdcolin)
- #1881 Add new text
searching functionality to core, with
jbrowse text-index
CLI command to
generate trix index (@teresam856)
๐ Bug Fixโ
core
- #2320 Fix issue
where add track widget doesn't infer adapters on second usage
(@cmdcolin)
- #2250 Prevent the
ToggleButton for the FileSelector toggling to local file when only URL
should be available (@cmdcolin)
- Other
- #2309 Fix mouseover
selection appearing across unrelated blocks
(@cmdcolin)
- #2283 Fix ability
for the variant detail panel to create breakpoint split view for <TRA>
elements (@cmdcolin)
- #2268 Fix
autocomplete height on small displays
(@cmdcolin)
๐ Documentationโ
- #2300 Release
announcement draft v1.4.0 (@teresam856)
- #2310 Add cancer demos
to the demos page on website (@cmdcolin)
- #2253 Add note about
legacy-peer-deps to embedded component readme
(@cmdcolin)
- #2262 Add more MDX
documentation pages to @jbrowse/react-linear-genome-view storybooks
(@cmdcolin)
๐ Internalโ
Committers: 3โ