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v3.0.2 Release

· 2 min read

This release mostly has small bugfixes and minor improvements

  • Fix for some CRAM files that use "archival" bzip2 codecs
  • Change multi-variant viewer to use a blue color for the "major ALT allele" rather than just ALT===1
  • Use assembly "displayName" in view headers
  • Group transcripts from GTF files into gene level features
  • Improved ?hubURL behavior to load defaultLocation, assembly names
  • Handle random color generation for >10 categories in the multi-variant viewer

Downloads​

To install JBrowse 2 for the web, you can download the link above, or you can use the JBrowse CLI to automatically download the latest version. See the JBrowse web quick start for more details.

yarn run v1.22.22 $ lerna-changelog --silent --silent --next-version 3.0.2

3.0.2 (2025-02-13)​

🚀 Enhancement​

  • core
    • #4834 Update ReExports for @jbrowse/core/BaseFeatureDetails (@cmdcolin)
    • #4818 Improve status updating for BamAdapter, CramAdapter (@cmdcolin)
    • #4811 Improvements to the sesson/config warning dialogs (@cmdcolin)
  • Other
    • #4829 Less gappyness at SVG features block boundaries (@cmdcolin)
    • #4828 Additional ?hubURL compat (@cmdcolin)
    • #4827 Improve status updating for BedTabixAdapter, Gff3TabixAdapter, VcfTabixAdapter, BigBedAdapter (@cmdcolin)
    • #4825 Handle multiple jobs with the same name (@garrettjstevens)
    • #4826 Calculate most frequent non-ref allele for multi-variant renderer (@cmdcolin)
    • #4824 Aggregate transcript level features in GTF based on "gene_name" field (@cmdcolin)
    • #4810 Ensure embedded users get the latest semver @gmod/vcf for multi-variant fixes (@cmdcolin)
  • app-core, core

🐛 Bug Fix​

  • sv-core
    • #4837 Update @gmod/cram for fixed decoding of some CRAM files (@cmdcolin)
  • Other
    • #4808 Fix random palette color generation for multi-variant colors (@cmdcolin)

📝 Documentation​

🏠 Internal​

Committers: 2​