{
  "assemblies": [
    {
      "name": "human",
      "sequence": {
        "type": "ReferenceSequenceTrack",
        "trackId": "human-ReferenceSequenceTrack",
        "adapter": {
          "type": "ChromSizesAdapter",
          "uri": "human.chrom.sizes"
        }
      }
    },
    {
      "name": "rhesus",
      "sequence": {
        "type": "ReferenceSequenceTrack",
        "trackId": "rhesus-ReferenceSequenceTrack",
        "adapter": {
          "type": "ChromSizesAdapter",
          "uri": "rhesus.chrom.sizes"
        }
      }
    }
  ],
  "tracks": [
    {
      "type": "FeatureTrack",
      "trackId": "human_genes",
      "name": "Human genes (GRCh38, Ensembl 116)",
      "assemblyNames": ["human"],
      "adapter": {
        "type": "Gff3TabixAdapter",
        "uri": "human.pc.gff3.gz"
      }
    },
    {
      "type": "FeatureTrack",
      "trackId": "rhesus_genes",
      "name": "Rhesus macaque genes (Mmul_10, Ensembl 116)",
      "assemblyNames": ["rhesus"],
      "adapter": {
        "type": "Gff3TabixAdapter",
        "uri": "rhesus.pc.gff3.gz"
      }
    },
    {
      "type": "SyntenyTrack",
      "trackId": "primate_orthologs",
      "name": "Human / rhesus orthologs (dN/dS)",
      "assemblyNames": ["human", "rhesus"],
      "adapter": {
        "type": "MCScanBlocksAdapter",
        "uri": "primate.blocks.gz",
        "blockAssemblies": ["human", "rhesus"],
        "bedLocations": [
          {
            "uri": "human.bed.gz"
          },
          {
            "uri": "rhesus.bed.gz"
          }
        ],
        "assemblyNames": ["human", "rhesus"],
        "attributeColumns": ["dn", "ds", "syn_subs", "fisher_p"]
      }
    }
  ],
  "defaultSession": {
    "name": "Selection pressure across a primate gene neighbourhood",
    "views": [
      {
        "type": "LinearSyntenyView",
        "displayName": "Human vs rhesus macaque orthologs, coloured by dN/dS",
        "views": [
          {
            "assembly": "human",
            "loc": "12:68,790,000-69,880,000",
            "tracks": ["human_genes"]
          },
          {
            "assembly": "rhesus",
            "loc": "11:68,330,000-69,390,000",
            "tracks": ["rhesus_genes"]
          }
        ],
        "tracks": [["primate_orthologs"]],
        "color": { "field": "dnds" },
        "opacity": 0.95,
        "drawCurves": true
      }
    ]
  }
}