{
  "assemblies": [
    {
      "name": "human",
      "displayName": "Human (GRCh38.p14)",
      "sequence": {
        "type": "ReferenceSequenceTrack",
        "trackId": "human-ReferenceSequenceTrack",
        "adapter": {
          "type": "ChromSizesAdapter",
          "chromSizesLocation": {
            "uri": "human.chrom.sizes",
            "locationType": "UriLocation"
          }
        }
      },
      "refNameAliases": {
        "adapter": {
          "type": "NcbiSequenceReportAliasAdapter",
          "location": {
            "uri": "human.sequence_report.tsv",
            "locationType": "UriLocation"
          }
        }
      }
    },
    {
      "name": "chimp",
      "displayName": "Chimpanzee (NHGRI_mPanTro3-v2.1)",
      "sequence": {
        "type": "ReferenceSequenceTrack",
        "trackId": "chimp-ReferenceSequenceTrack",
        "adapter": {
          "type": "ChromSizesAdapter",
          "chromSizesLocation": {
            "uri": "chimp.chrom.sizes",
            "locationType": "UriLocation"
          }
        }
      },
      "refNameAliases": {
        "adapter": {
          "type": "NcbiSequenceReportAliasAdapter",
          "location": {
            "uri": "chimp.sequence_report.tsv",
            "locationType": "UriLocation"
          }
        }
      }
    },
    {
      "name": "bonobo",
      "displayName": "Bonobo (NHGRI_mPanPan1-v2.1)",
      "sequence": {
        "type": "ReferenceSequenceTrack",
        "trackId": "bonobo-ReferenceSequenceTrack",
        "adapter": {
          "type": "ChromSizesAdapter",
          "chromSizesLocation": {
            "uri": "bonobo.chrom.sizes",
            "locationType": "UriLocation"
          }
        }
      },
      "refNameAliases": {
        "adapter": {
          "type": "NcbiSequenceReportAliasAdapter",
          "location": {
            "uri": "bonobo.sequence_report.tsv",
            "locationType": "UriLocation"
          }
        }
      }
    },
    {
      "name": "gorilla",
      "displayName": "Gorilla (NHGRI_mGorGor1-v2.1)",
      "sequence": {
        "type": "ReferenceSequenceTrack",
        "trackId": "gorilla-ReferenceSequenceTrack",
        "adapter": {
          "type": "ChromSizesAdapter",
          "chromSizesLocation": {
            "uri": "gorilla.chrom.sizes",
            "locationType": "UriLocation"
          }
        }
      },
      "refNameAliases": {
        "adapter": {
          "type": "NcbiSequenceReportAliasAdapter",
          "location": {
            "uri": "gorilla.sequence_report.tsv",
            "locationType": "UriLocation"
          }
        }
      }
    },
    {
      "name": "sumatran",
      "displayName": "Sumatran orangutan (NHGRI_mPonAbe1-v2.1)",
      "sequence": {
        "type": "ReferenceSequenceTrack",
        "trackId": "sumatran-ReferenceSequenceTrack",
        "adapter": {
          "type": "ChromSizesAdapter",
          "chromSizesLocation": {
            "uri": "sumatran.chrom.sizes",
            "locationType": "UriLocation"
          }
        }
      },
      "refNameAliases": {
        "adapter": {
          "type": "NcbiSequenceReportAliasAdapter",
          "location": {
            "uri": "sumatran.sequence_report.tsv",
            "locationType": "UriLocation"
          }
        }
      }
    },
    {
      "name": "bornean",
      "displayName": "Bornean orangutan (NHGRI_mPonPyg2-v2.1)",
      "sequence": {
        "type": "ReferenceSequenceTrack",
        "trackId": "bornean-ReferenceSequenceTrack",
        "adapter": {
          "type": "ChromSizesAdapter",
          "chromSizesLocation": {
            "uri": "bornean.chrom.sizes",
            "locationType": "UriLocation"
          }
        }
      },
      "refNameAliases": {
        "adapter": {
          "type": "NcbiSequenceReportAliasAdapter",
          "location": {
            "uri": "bornean.sequence_report.tsv",
            "locationType": "UriLocation"
          }
        }
      }
    },
    {
      "name": "siamang",
      "displayName": "Siamang (NHGRI_mSymSyn1-v2.1)",
      "sequence": {
        "type": "ReferenceSequenceTrack",
        "trackId": "siamang-ReferenceSequenceTrack",
        "adapter": {
          "type": "ChromSizesAdapter",
          "chromSizesLocation": {
            "uri": "siamang.chrom.sizes",
            "locationType": "UriLocation"
          }
        }
      },
      "refNameAliases": {
        "adapter": {
          "type": "NcbiSequenceReportAliasAdapter",
          "location": {
            "uri": "siamang.sequence_report.tsv",
            "locationType": "UriLocation"
          }
        }
      }
    },
    {
      "name": "macaque",
      "displayName": "Rhesus macaque (T2T-MMU8v2.0)",
      "sequence": {
        "type": "ReferenceSequenceTrack",
        "trackId": "macaque-ReferenceSequenceTrack",
        "adapter": {
          "type": "ChromSizesAdapter",
          "chromSizesLocation": {
            "uri": "macaque.chrom.sizes",
            "locationType": "UriLocation"
          }
        }
      },
      "refNameAliases": {
        "adapter": {
          "type": "NcbiSequenceReportAliasAdapter",
          "location": {
            "uri": "macaque.sequence_report.tsv",
            "locationType": "UriLocation"
          }
        }
      }
    }
  ],
  "configuration": {},
  "connections": [],
  "tracks": [
    {
      "type": "FeatureTrack",
      "trackId": "human_genes",
      "name": "Human (GRCh38.p14) genes (RefSeq)",
      "assemblyNames": [
        "human"
      ],
      "adapter": {
        "type": "Gff3TabixAdapter",
        "gffGzLocation": {
          "uri": "human.gff.gz",
          "locationType": "UriLocation"
        },
        "index": {
          "location": {
            "uri": "human.gff.gz.tbi",
            "locationType": "UriLocation"
          },
          "indexType": "TBI"
        }
      }
    },
    {
      "type": "FeatureTrack",
      "trackId": "chimp_genes",
      "name": "Chimpanzee (NHGRI_mPanTro3-v2.1) genes (RefSeq)",
      "assemblyNames": [
        "chimp"
      ],
      "adapter": {
        "type": "Gff3TabixAdapter",
        "gffGzLocation": {
          "uri": "chimp.gff.gz",
          "locationType": "UriLocation"
        },
        "index": {
          "location": {
            "uri": "chimp.gff.gz.tbi",
            "locationType": "UriLocation"
          },
          "indexType": "TBI"
        }
      }
    },
    {
      "type": "FeatureTrack",
      "trackId": "bonobo_genes",
      "name": "Bonobo (NHGRI_mPanPan1-v2.1) genes (RefSeq)",
      "assemblyNames": [
        "bonobo"
      ],
      "adapter": {
        "type": "Gff3TabixAdapter",
        "gffGzLocation": {
          "uri": "bonobo.gff.gz",
          "locationType": "UriLocation"
        },
        "index": {
          "location": {
            "uri": "bonobo.gff.gz.tbi",
            "locationType": "UriLocation"
          },
          "indexType": "TBI"
        }
      }
    },
    {
      "type": "FeatureTrack",
      "trackId": "gorilla_genes",
      "name": "Gorilla (NHGRI_mGorGor1-v2.1) genes (RefSeq)",
      "assemblyNames": [
        "gorilla"
      ],
      "adapter": {
        "type": "Gff3TabixAdapter",
        "gffGzLocation": {
          "uri": "gorilla.gff.gz",
          "locationType": "UriLocation"
        },
        "index": {
          "location": {
            "uri": "gorilla.gff.gz.tbi",
            "locationType": "UriLocation"
          },
          "indexType": "TBI"
        }
      }
    },
    {
      "type": "FeatureTrack",
      "trackId": "sumatran_genes",
      "name": "Sumatran orangutan (NHGRI_mPonAbe1-v2.1) genes (RefSeq)",
      "assemblyNames": [
        "sumatran"
      ],
      "adapter": {
        "type": "Gff3TabixAdapter",
        "gffGzLocation": {
          "uri": "sumatran.gff.gz",
          "locationType": "UriLocation"
        },
        "index": {
          "location": {
            "uri": "sumatran.gff.gz.tbi",
            "locationType": "UriLocation"
          },
          "indexType": "TBI"
        }
      }
    },
    {
      "type": "FeatureTrack",
      "trackId": "bornean_genes",
      "name": "Bornean orangutan (NHGRI_mPonPyg2-v2.1) genes (RefSeq)",
      "assemblyNames": [
        "bornean"
      ],
      "adapter": {
        "type": "Gff3TabixAdapter",
        "gffGzLocation": {
          "uri": "bornean.gff.gz",
          "locationType": "UriLocation"
        },
        "index": {
          "location": {
            "uri": "bornean.gff.gz.tbi",
            "locationType": "UriLocation"
          },
          "indexType": "TBI"
        }
      }
    },
    {
      "type": "FeatureTrack",
      "trackId": "siamang_genes",
      "name": "Siamang (NHGRI_mSymSyn1-v2.1) genes (RefSeq)",
      "assemblyNames": [
        "siamang"
      ],
      "adapter": {
        "type": "Gff3TabixAdapter",
        "gffGzLocation": {
          "uri": "siamang.gff.gz",
          "locationType": "UriLocation"
        },
        "index": {
          "location": {
            "uri": "siamang.gff.gz.tbi",
            "locationType": "UriLocation"
          },
          "indexType": "TBI"
        }
      }
    },
    {
      "type": "FeatureTrack",
      "trackId": "macaque_genes",
      "name": "Rhesus macaque (T2T-MMU8v2.0) genes (RefSeq)",
      "assemblyNames": [
        "macaque"
      ],
      "adapter": {
        "type": "Gff3TabixAdapter",
        "gffGzLocation": {
          "uri": "macaque.gff.gz",
          "locationType": "UriLocation"
        },
        "index": {
          "location": {
            "uri": "macaque.gff.gz.tbi",
            "locationType": "UriLocation"
          },
          "indexType": "TBI"
        }
      }
    },
    {
      "type": "SyntenyTrack",
      "trackId": "primate_orthologs",
      "name": "Primate orthologs by gene symbol (8 genomes, RefSeq)",
      "assemblyNames": [
        "human",
        "chimp",
        "bonobo",
        "gorilla",
        "sumatran",
        "bornean",
        "siamang",
        "macaque"
      ],
      "adapter": {
        "type": "MCScanBlocksAdapter",
        "mcscanBlocksLocation": {
          "uri": "primates.blocks",
          "locationType": "UriLocation"
        },
        "blockAssemblies": [
          "human",
          "chimp",
          "bonobo",
          "gorilla",
          "sumatran",
          "bornean",
          "siamang",
          "macaque"
        ],
        "bedLocations": [
          {
            "uri": "human.bed",
            "locationType": "UriLocation"
          },
          {
            "uri": "chimp.bed",
            "locationType": "UriLocation"
          },
          {
            "uri": "bonobo.bed",
            "locationType": "UriLocation"
          },
          {
            "uri": "gorilla.bed",
            "locationType": "UriLocation"
          },
          {
            "uri": "sumatran.bed",
            "locationType": "UriLocation"
          },
          {
            "uri": "bornean.bed",
            "locationType": "UriLocation"
          },
          {
            "uri": "siamang.bed",
            "locationType": "UriLocation"
          },
          {
            "uri": "macaque.bed",
            "locationType": "UriLocation"
          }
        ],
        "assemblyNames": [
          "human",
          "chimp",
          "bonobo",
          "gorilla",
          "sumatran",
          "bornean",
          "siamang",
          "macaque"
        ]
      },
      "displays": [
        {
          "type": "MultiWaySyntenyDisplay",
          "displayId": "primate_orthologs-MultiWaySyntenyDisplay",
          "color": "jexl:feature.name ? randomColor(feature.name) : '#b0b0b0'"
        }
      ]
    }
  ],
  "defaultSession": {
    "name": "Primate orthologs",
    "views": [
      {
        "type": "LinearGenomeView",
        "assembly": "human",
        "loc": "chr17:7,400,000-7,700,000",
        "tracks": [
          "primate_orthologs"
        ]
      }
    ]
  }
}
