{
  "assemblies": [
    {
      "name": "human",
      "sequence": {
        "type": "ReferenceSequenceTrack",
        "trackId": "human-ReferenceSequenceTrack",
        "adapter": {
          "type": "ChromSizesAdapter",
          "chromSizesLocation": {
            "uri": "human.chrom.sizes",
            "locationType": "UriLocation"
          }
        }
      }
    },
    {
      "name": "chicken",
      "sequence": {
        "type": "ReferenceSequenceTrack",
        "trackId": "chicken-ReferenceSequenceTrack",
        "adapter": {
          "type": "ChromSizesAdapter",
          "chromSizesLocation": {
            "uri": "chicken.chrom.sizes",
            "locationType": "UriLocation"
          }
        }
      }
    },
    {
      "name": "frog",
      "sequence": {
        "type": "ReferenceSequenceTrack",
        "trackId": "frog-ReferenceSequenceTrack",
        "adapter": {
          "type": "ChromSizesAdapter",
          "chromSizesLocation": {
            "uri": "frog.chrom.sizes",
            "locationType": "UriLocation"
          }
        }
      }
    },
    {
      "name": "gar",
      "sequence": {
        "type": "ReferenceSequenceTrack",
        "trackId": "gar-ReferenceSequenceTrack",
        "adapter": {
          "type": "ChromSizesAdapter",
          "chromSizesLocation": {
            "uri": "gar.chrom.sizes",
            "locationType": "UriLocation"
          }
        }
      }
    },
    {
      "name": "zebrafish",
      "sequence": {
        "type": "ReferenceSequenceTrack",
        "trackId": "zebrafish-ReferenceSequenceTrack",
        "adapter": {
          "type": "ChromSizesAdapter",
          "chromSizesLocation": {
            "uri": "zebrafish.chrom.sizes",
            "locationType": "UriLocation"
          }
        }
      }
    }
  ],
  "configuration": {},
  "connections": [],
  "defaultSession": {
    "name": "Vertebrates orthology synteny",
    "views": [
      {
        "type": "LinearSyntenyView",
        "displayName": "human - chicken - frog - gar - zebrafish (OrthoFinder orthogroups)",
        "showColorLegend": false,
        "init": {
          "views": [
            {
              "assembly": "human"
            },
            {
              "assembly": "chicken"
            },
            {
              "assembly": "frog"
            },
            {
              "assembly": "gar"
            },
            {
              "assembly": "zebrafish"
            }
          ],
          "tracks": [
            ["vertebrates_orthogroups"],
            ["vertebrates_orthogroups"],
            ["vertebrates_orthogroups"],
            ["vertebrates_orthogroups"]
          ],
          "colorBy": "reference",
          "autoDiagonalize": true,
          "sameScale": true,
          "collapseEmptyRows": true
        }
      }
    ]
  },
  "tracks": [
    {
      "type": "FeatureTrack",
      "trackId": "human_genes",
      "name": "human genes",
      "adapter": {
        "type": "Gff3TabixAdapter",
        "gffGzLocation": {
          "uri": "human.sorted.gff3.gz",
          "locationType": "UriLocation"
        },
        "index": {
          "location": {
            "uri": "human.sorted.gff3.gz.csi",
            "locationType": "UriLocation"
          },
          "indexType": "CSI"
        }
      },
      "assemblyNames": ["human"]
    },
    {
      "type": "FeatureTrack",
      "trackId": "chicken_genes",
      "name": "chicken genes",
      "adapter": {
        "type": "Gff3TabixAdapter",
        "gffGzLocation": {
          "uri": "chicken.sorted.gff3.gz",
          "locationType": "UriLocation"
        },
        "index": {
          "location": {
            "uri": "chicken.sorted.gff3.gz.csi",
            "locationType": "UriLocation"
          },
          "indexType": "CSI"
        }
      },
      "assemblyNames": ["chicken"]
    },
    {
      "type": "FeatureTrack",
      "trackId": "frog_genes",
      "name": "frog genes",
      "adapter": {
        "type": "Gff3TabixAdapter",
        "gffGzLocation": {
          "uri": "frog.sorted.gff3.gz",
          "locationType": "UriLocation"
        },
        "index": {
          "location": {
            "uri": "frog.sorted.gff3.gz.csi",
            "locationType": "UriLocation"
          },
          "indexType": "CSI"
        }
      },
      "assemblyNames": ["frog"]
    },
    {
      "type": "FeatureTrack",
      "trackId": "gar_genes",
      "name": "gar genes",
      "adapter": {
        "type": "Gff3TabixAdapter",
        "gffGzLocation": {
          "uri": "gar.sorted.gff3.gz",
          "locationType": "UriLocation"
        },
        "index": {
          "location": {
            "uri": "gar.sorted.gff3.gz.csi",
            "locationType": "UriLocation"
          },
          "indexType": "CSI"
        }
      },
      "assemblyNames": ["gar"]
    },
    {
      "type": "FeatureTrack",
      "trackId": "zebrafish_genes",
      "name": "zebrafish genes",
      "adapter": {
        "type": "Gff3TabixAdapter",
        "gffGzLocation": {
          "uri": "zebrafish.sorted.gff3.gz",
          "locationType": "UriLocation"
        },
        "index": {
          "location": {
            "uri": "zebrafish.sorted.gff3.gz.csi",
            "locationType": "UriLocation"
          },
          "indexType": "CSI"
        }
      },
      "assemblyNames": ["zebrafish"]
    },
    {
      "type": "SyntenyTrack",
      "trackId": "vertebrates_orthogroups",
      "name": "Vertebrates orthogroups (OrthoFinder)",
      "assemblyNames": ["human", "chicken", "frog", "gar", "zebrafish"],
      "adapter": {
        "type": "MCScanBlocksAdapter",
        "uri": "human.blocks.gz",
        "blockAssemblies": ["chicken", "frog", "gar", "human", "zebrafish"],
        "bedLocations": [
          {
            "uri": "chicken.bed.gz"
          },
          {
            "uri": "frog.bed.gz"
          },
          {
            "uri": "gar.bed.gz"
          },
          {
            "uri": "human.bed.gz"
          },
          {
            "uri": "zebrafish.bed.gz"
          }
        ],
        "assemblyNames": ["human", "chicken", "frog", "gar", "zebrafish"]
      }
    }
  ]
}