{
  "$schema": "https://jbrowse.org/jb2/schema/v5/config.json",
  "assemblies": [
    {
      "name": "TAIR10",
      "displayName": "Arabidopsis thaliana (TAIR10)",
      "sequence": {
        "type": "ReferenceSequenceTrack",
        "trackId": "TAIR10-refseq",
        "adapter": {
          "type": "BgzipFastaAdapter",
          "uri": "https://jbrowse.org/demos/circular_synteny_brassica/TAIR10.fa.gz"
        }
      },
      "refNameColors": ["#1f77b4", "#ff7f0e", "#2ca02c", "#d62728", "#9467bd"]
    },
    {
      "name": "Brapa",
      "displayName": "Brassica rapa (Chiifu v3.01)",
      "sequence": {
        "type": "ReferenceSequenceTrack",
        "trackId": "Brapa-refseq",
        "adapter": {
          "type": "BgzipFastaAdapter",
          "uri": "https://jbrowse.org/demos/circular_synteny_brassica/Brapa.fa.gz"
        }
      }
    }
  ],
  "tracks": [
    {
      "type": "SyntenyTrack",
      "trackId": "Brapa_to_TAIR10",
      "name": "Brapa aligned to TAIR10",
      "assemblyNames": ["Brapa", "TAIR10"],
      "adapter": {
        "type": "PairwiseIndexedPAFAdapter",
        "uri": "https://jbrowse.org/demos/circular_synteny_brassica/Brapa_to_TAIR10.pif.gz",
        "csi": true,
        "queryAssembly": "Brapa",
        "targetAssembly": "TAIR10"
      }
    }
  ],
  "defaultSession": {
    "name": "TAIR10 and Brapa on one circle",
    "views": [
      {
        "type": "CircularView",
        "assembly": ["TAIR10", "Brapa"],
        "height": 780,
        "tracks": ["Brapa_to_TAIR10"],
        "filter": [{ "field": "length", "gte": 1000 }]
      }
    ]
  }
}