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Classes


Class SequenceTrack


Defined in: SequenceTrack.js.

Class Summary
Constructor Attributes Constructor Name and Description
 
SequenceTrack(config, refSeq, browserParams)
Track to display the underlying reference sequence, when zoomed in far enough.
Field Summary
Field Attributes Field Name and Description
 
Method Summary
Method Attributes Method Name and Description
 
endZoom(destScale, destBlockBases)
 
fillBlock(blockIndex, block, leftBlock, rightBlock, leftBase, rightBase, scale, stripeWidth, containerStart, containerEnd)
 
renderSeqDiv(start, end, seq)
 
setViewInfo(genomeView, numBlocks, trackDiv, labelDiv, widthPct, widthPx, scale)
 
startZoom(destScale, destStart, destEnd)
Class Detail
SequenceTrack(config, refSeq, browserParams)
Track to display the underlying reference sequence, when zoomed in far enough.
Parameters:
{Object} config
key: display text track name label: internal track name (no spaces or odd characters) urlTemplate: url of directory in which to find the sequence chunks chunkSize: size of sequence chunks, in characters
{Object} refSeq
start: refseq start end: refseq end name: refseq name
{Object} browserParams
changeCallback: function to call once JSON is loaded trackPadding: distance in px between tracks charWidth: width, in pixels, of sequence base characters seqHeight: height, in pixels, of sequence elements
Field Detail
complement
Method Detail
endZoom(destScale, destBlockBases)
Parameters:
destScale
destBlockBases

fillBlock(blockIndex, block, leftBlock, rightBlock, leftBase, rightBase, scale, stripeWidth, containerStart, containerEnd)
Parameters:
blockIndex
block
leftBlock
rightBlock
leftBase
rightBase
scale
stripeWidth
containerStart
containerEnd

renderSeqDiv(start, end, seq)
Parameters:
start
end
seq

setViewInfo(genomeView, numBlocks, trackDiv, labelDiv, widthPct, widthPx, scale)
Parameters:
genomeView
numBlocks
trackDiv
labelDiv
widthPct
widthPx
scale

startZoom(destScale, destStart, destEnd)
Parameters:
destScale
destStart
destEnd

Documentation generated by JsDoc Toolkit 2.4.0 on Thu Apr 19 2012 17:55:42 GMT-0400 (EDT)