JBrowse 1.10.8 has been released, with an important bugfix for generate-names.pl, better REST data store feature caching, and more.
Files for download:
- JBrowse-1.10.8.zip – 4.6M
file SHA1 c6161ee7814dbc02878cdf642ab62b82bc61dbab
- JBrowse-1.10.8-dev.zip – 26M
file SHA1 0b288a98220159c5c97f6ea3bd8eb5b987cc4087
Added a new
navigateToaction usable for customizing feature
left-clicks and right-click menus. Thanks to Scott Cain for
Added a new
feature_range_cacheoption for the REST data backend.
If set to true, the REST backend will more aggressively cache
ranges of feature data. Thanks to Daniel Troesser for pointing out
the need for this (issue #369).
maker2jbrowsenow, by default, runs
generate names indexes. Also added a
turn this off. Thanks to Josie Reinhardt for making me notice this
generate-names.pldefault indexing parameters to
emphasize indexing speed more. Now defaults to a smaller average
file size for the on-disk JSON files it produces, which is much
faster to generate and write (up to 8 or 10x faster). However, the
on-disk index is about 2-2.5x larger overall.
Removed support for the
--refidscommand-line argument to
prepare-refseqs.pl, which has probably never really worked.
prepare-refseqs.plsupport for Bio::DB::Das::Chado
database backends. Thanks to Gwendoline Andres for helping
Fixed generate-names.pl making incorrect name indexes when using 16
or more bits of hashing (when the number of index entries exceeds
about 4 million). Thanks to Josie Reinhardt for helping
troubleshoot this (issue #370).
The faceted track selector no longer refuses to display track
unique labels even if they are explicitly included in the