Category Archives: Software releases

JBrowse 1.9.1 maintenance release

JBrowse 1.9.1 has been released, with performance improvements in both BAM and VCF tracks, and lots of smaller fixes and improvements. Files for download: JBrowse-1.9.1.zip – 5.0M file SHA1 1dc089e42e626da5312a8091dbcd1972a1cfb0fd JBrowse-1.9.1-dev.zip – 28.6M file SHA1 bc5bb43ad8b71a9190e8c2a400d7db2364882e09 Changes in this release: Significant speed … Continue reading

Posted in Software releases | Leave a comment

JBrowse 1.9.0: VCF support, dataset switching, wiggle track dynamic scaling, REST backend

JBrowse 1.9.0 is out today, with some great new features, and lots of smaller improvements and bug fixes. Download links: JBrowse-1.9.0.zip – 5.0M – Includes everything you need to display your data on the web with JBrowse, optimized for fast loading speed. … Continue reading

Posted in Software releases | Leave a comment

JBrowse 1.8.1 bugfix release

JBrowse 1.8.1 has been released, with several small fixes and additional features, mostly related to displaying features on peptide sequences. Files for download: JBrowse-1.8.1.zip – 3.3M JBrowse-1.8.1-dev.zip – 28.6M Changes in this release: Added support for cigarAttribute and mdAttributes configuration variables to … Continue reading

Posted in Software releases | Leave a comment

JBrowse 1.8.0: opens local files, new BAM track types, new plugin system

JBrowse 1.8.0 is finally here, with some great new features, and lots of smaller improvements. Download links: JBrowse-1.8.0.zip – 3.3M – Includes everything you need to display your data on the web with JBrowse, optimized for fast loading speed. JBrowse-1.8.0-dev.zip – 28M … Continue reading

Posted in Software releases | Leave a comment

JBrowse 1.7.6 bugfix release

JBrowse 1.7.6 has been released, containing a fix for yet another bug that prevented display of certain kinds of BAM files. The rate of bug reports for BAM support is tailing off, and it’s starting to look pretty solid. Thanks … Continue reading

Posted in Software releases | Leave a comment

JBrowse 1.7.5 bugfix release

JBrowse 1.7.5 has been released, containing fixes for some more issues found in the 1.7.4 release and earlier releases in the 1.7.x series. Files for download: JBrowse-1.7.5.zip – 2.9M JBrowse-1.7.5-dev.zip – 28.6M Changes in this release: Fixed a bug in which typing … Continue reading

Posted in Software releases | Leave a comment

JBrowse 1.7.4 bugfix release

JBrowse 1.7.4 has been released, containing fixes for some more issues found in the 1.7.3 release and earlier.  In particular, several bad bugs have been fixed in support for Safari, Opera, and Internet Explorer. Files for download: JBrowse-1.7.4.zip – 2.9M JBrowse-1.7.4-dev.zip – … Continue reading

Posted in Software releases | Leave a comment

JBrowse 1.7.3 bugfix release

JBrowse 1.7.3 has been released, containing fixes for some more issues found in the 1.7.2 release and earlier.  Remote BAM access is rather difficult to get right, thanks very much to the people who continue to step forward to report … Continue reading

Posted in Software releases | Leave a comment

JBrowse 1.7.2 bugfix release

JBrowse 1.7.2 has been released, containing a fix for some further BAM issues found in the 1.7.1 release.  Thanks so much to everyone who has worked with me to isolate problems in JBrowse’s BAM support.  The more people report problems, … Continue reading

Posted in Software releases | Leave a comment

JBrowse 1.7.1 bugfix release

JBrowse 1.7.1 has been released, containing fixes for some issues in the 1.7.0 release. Files for download: JBrowse-1.7.1.zip – 2.9M JBrowse-1.7.1-dev.zip – 28.3M Changes in this release: Fixed bug in which bars below the origin of Wiggle/XYPlot were drawn incorrectly (issue #161). … Continue reading

Posted in Software releases | Leave a comment