Category Archives: Software releases

JBrowse 1.10.8 maintenance release

JBrowse 1.10.8 has been released, with an important bugfix for generate-names.pl, better REST data store feature caching, and more. Files for download: JBrowse-1.10.8.zip – 4.6M file SHA1 c6161ee7814dbc02878cdf642ab62b82bc61dbab JBrowse-1.10.8-dev.zip – 26M file SHA1 0b288a98220159c5c97f6ea3bd8eb5b987cc4087 Minor improvements Added a new navigateTo action usable … Continue reading

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JBrowse 1.10.7 maintenance release

JBrowse 1.10.7 has been released, with some important bug fixes and added support for displaying feature density histograms from REST stores. Files for download: JBrowse-1.10.7.zip – 4.6M file SHA1 105e24540994b9018191cb3b5103fb62dc285c67 JBrowse-1.10.7-dev.zip – 26M file SHA1 29d6cd66275536dade330d4016b74c419f704a9a Minor improvements Added an optional stats/regionFeatureDensities … Continue reading

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JBrowse 1.10.6 maintenance release

JBrowse 1.10.6 has been released, with some important bug fixes. Files for download: JBrowse-1.10.6.zip – 4.6M file SHA1 8ea2757703a83e038fb4a733056a7bc8ef8747c4 JBrowse-1.10.6-dev.zip – 26M file SHA1 513f6c6e5b7e4a827b87f123f761fb669b90f1cb Minor improvements Made the impliedUTRs option for ProcessedTranscript and Gene glyph still attempt to create UTRs if … Continue reading

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JBrowse 1.10.5 maintenance release

JBrowse 1.10.5 has been released, with some important bug fixes and more performance improvements for data formatting scripts. Files for download: JBrowse-1.10.5.zip – 4.6M file SHA1 17a07058a98900d2cff5d1db441ab3d2b5a425a1 JBrowse-1.10.5-dev.zip – 26M file SHA1 c060c487fcd361cc4b41075696cef6cfc005f150 Minor improvements Greatly improved the speed and reduced the … Continue reading

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JBrowse 1.10.4 maintenance release

JBrowse 1.10.4 has been released, with a new simple sequence-search track tool, large performance improvements for generate-names.pl, and some new filtering options for VCF-based variant tracks. Files for download: JBrowse-1.10.4.zip – 4.6M file SHA1 0cfc8106e0b89fcc937701be74830c30b9f894cc JBrowse-1.10.4-dev.zip – 26M file SHA1 9b4d7aa9c6cb702853e3080fd7dedfae32a095ca Minor … Continue reading

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JBrowse 1.10.3 maintenance release

JBrowse 1.10.3 has been released, with a lot of small enhancements and important bugfixes. Files for download: JBrowse-1.10.3.zip – 4.8M file SHA1 3be482df63ce10a9211483bc760d3b4137a2e77f JBrowse-1.10.3-dev.zip – 26M file SHA1 825093524bbf09f0f724f80332342b99f8e50734 Minor improvements Added options to Alignments, Alignments2, and SNPCoverage tracks to allow hiding … Continue reading

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JBrowse 1.10.2 maintenance release

JBrowse 1.10.2 has been released, with fixes for some minor issues, and some minor improvements to the CanvasFeatures track. Files for download: JBrowse-1.10.2.zip – 5.2M file SHA1 4e00586e070d8797a3598b405d3502906993c4e5 JBrowse-1.10.2-dev.zip – 26M file SHA1 8865724542fcbdec5de974273b27e0a10680156b Changes in this release: Added mouse-over ‘tooltips’ to … Continue reading

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JBrowse 1.10.1 maintenance release

JBrowse 1.10.1 has been released, with fixes for some minor issues and one major issue. Files for download: JBrowse-1.10.1.zip – 5.2M file SHA1 3677d10ba4ffd6ba604871dc11b1989131baff9f JBrowse-1.10.1-dev.zip – 26M file SHA1 f6a1a89d42498887ee0123ce2b98afea4478b6e0 Changes in this release: Added support in maker2jbrowse for user-defined source tags … Continue reading

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JBrowse 1.10.0: Combination tracks, better feature tracks, more glyphs, SPARQL support, and track pinning!

After a long, hard development push, JBrowse 1.10.0 is out today!  There are several major improvements in this release, and a huge number of smaller improvements and bugfixes. Download links JBrowse-1.10.0.zip – 5.2M – Includes everything you need to display your … Continue reading

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JBrowse 1.9.8 maintenance release

JBrowse 1.9.8 has been released, with fixes for some minor issues, a performance improvement when many HTML-based tracks are open, and a new yScalePosition configuration option for all tracks can can be set to “left”, “right”, or “center” to change … Continue reading

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