Category Archives: Software releases

JBrowse-1.11.6 maintenance release

I’m pleased to announce JBrowse 1.11.6 is now available! Everybody’s feedback, bug reports, pull requests, and feature requests have been invaluable for making this happen. This release includes new UI options for easily setting “Log scale” on wiggle tracks and … Continue reading

Posted in News, Software releases | Leave a comment

JBrowse-1.11.5 maintenance release

A new JBrowse release has arrived! JBrowse 1.11.5 incorporates many valuable contributions and feedback from the community which has been overwhelmingly positive. Some notable bugs have been fixed, including a long-standing VCF file parsing bug, a scrolling bug that affected … Continue reading

Posted in News, Software releases | Leave a comment

JBrowse-1.11.4 maintenance release

I am happy to announce the release of JBrowse 1.11.4. This is the first release after Rob’s leave, and it represents the great community effort to keep things going. There are some exciting new developments in this version, including high-resolution … Continue reading

Posted in News, Software releases | Leave a comment

JBrowse 1.11.3 maintenance release

JBrowse 1.11.3 has been released, with quite a few improvements and bugfixes, including a new coloring scheme for BAM alignment tracks (Alignments2 tracks), a fix for some annoying bugs with the feature arrowheads, and some nice new configuration variables for … Continue reading

Posted in Software releases | Leave a comment

JBrowse 1.11.2 maintenance release

JBrowse 1.11.2 has been released, with some new controls to adjust the size of quantitative tracks (thanks to Evan Briones at University of Arizona!), added support for the new text-based tracks.conf files to generate-names.pl, and quite a few other small … Continue reading

Posted in Software releases | Leave a comment

JBrowse 1.11.1 maintenance release

JBrowse 1.11.1 has been released, with a number of bug fixes and some nice improvements to Alignments2 tracks. Most of the Alignments2 improvements were thought up by Keiran Raine at Sanger, thanks Keiran! Thanks also to Cris Lawrence and Richard … Continue reading

Posted in Software releases | Leave a comment

JBrowse 1.11.0: hierarchical track selector, easier configuration, summary mode

JBrowse 1.11.0 is out today, with some major new features, and, as always, quite a lot of smaller bugfixes and improvements. But first, the download links: JBrowse-1.11.0.zip – 4.7M – installation quick-start tutorial file SHA1 49fb7be687c5dff7857d080bf8503cddedea4e51 JBrowse-1.11.0-dev.zip – 26M file SHA1 daa4de81cb11f3d1f0406887a1fbc06efdd44fff Firstly, JBrowse … Continue reading

Posted in Software releases | Leave a comment

JBrowse 1.10.12 maintenance release (please upgrade!)

JBrowse 1.10.12 has been released, and we are asking all users of JBrowse 1.10.7 1.10.10 and higher to please upgrade to this release as soon as possible. The story behind this is a bit embarassing: I discovered today that JBrowse releases … Continue reading

Posted in Development, Software releases | Leave a comment

JBrowse 1.10.11 maintenance release

JBrowse 1.10.11 has been released, with many bug fixes and better support for spliced alignments in SNPCoverage tracks. (Download disabled.  Please download the 1.10.12 release or later instead.) Minor improvements Made the sequence track’s “zoom in to see sequence” placeholder … Continue reading

Posted in Software releases | Leave a comment

JBrowse 1.10.10 maintenance release

JBrowse 1.10.10 has been released, with new compression support in generate-names.pl, configurable inter-track spacing, and quite a few bug fixes. (Download disabled.  Please download the 1.10.12 release or later instead.) Minor improvements Spacing between tracks is now configurable by setting … Continue reading

Posted in Software releases | Leave a comment