Category Archives: Software releases

JBrowse 1.10.12 maintenance release (please upgrade!)

JBrowse 1.10.12 has been released, and we are asking all users of JBrowse 1.10.7 1.10.10 and higher to please upgrade to this release as soon as possible. The story behind this is a bit embarassing: I discovered today that JBrowse releases … Continue reading

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JBrowse 1.10.11 maintenance release

JBrowse 1.10.11 has been released, with many bug fixes and better support for spliced alignments in SNPCoverage tracks. (Download disabled.  Please download the 1.10.12 release or later instead.) Minor improvements Made the sequence track’s “zoom in to see sequence” placeholder … Continue reading

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JBrowse 1.10.10 maintenance release

JBrowse 1.10.10 has been released, with new compression support in generate-names.pl, configurable inter-track spacing, and quite a few bug fixes. (Download disabled.  Please download the 1.10.12 release or later instead.) Minor improvements Spacing between tracks is now configurable by setting … Continue reading

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JBrowse 1.10.9 maintenance release

JBrowse 1.10.9 has been released, with new incremental-updating support in generate-names.pl, along with some other bug fixes and small improvements. Files for download: JBrowse-1.10.9.zip – 4.6M file SHA1 e05f599c8692489e7c184cfd6c340afc79519a38 JBrowse-1.10.9-dev.zip – 26M file SHA1 e74d9b8ab21aa31e9ce09ff996ec45916b934821 Minor improvements generate-names.pl now supports a –incremental … Continue reading

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JBrowse 1.10.8 maintenance release

JBrowse 1.10.8 has been released, with an important bugfix for generate-names.pl, better REST data store feature caching, and more. Files for download: JBrowse-1.10.8.zip – 4.6M file SHA1 c6161ee7814dbc02878cdf642ab62b82bc61dbab JBrowse-1.10.8-dev.zip – 26M file SHA1 0b288a98220159c5c97f6ea3bd8eb5b987cc4087 Minor improvements Added a new navigateTo action usable … Continue reading

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JBrowse 1.10.7 maintenance release

JBrowse 1.10.7 has been released, with some important bug fixes and added support for displaying feature density histograms from REST stores. Files for download: JBrowse-1.10.7.zip – 4.6M file SHA1 105e24540994b9018191cb3b5103fb62dc285c67 JBrowse-1.10.7-dev.zip – 26M file SHA1 29d6cd66275536dade330d4016b74c419f704a9a Minor improvements Added an optional stats/regionFeatureDensities … Continue reading

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JBrowse 1.10.6 maintenance release

JBrowse 1.10.6 has been released, with some important bug fixes. Files for download: JBrowse-1.10.6.zip – 4.6M file SHA1 8ea2757703a83e038fb4a733056a7bc8ef8747c4 JBrowse-1.10.6-dev.zip – 26M file SHA1 513f6c6e5b7e4a827b87f123f761fb669b90f1cb Minor improvements Made the impliedUTRs option for ProcessedTranscript and Gene glyph still attempt to create UTRs if … Continue reading

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JBrowse 1.10.5 maintenance release

JBrowse 1.10.5 has been released, with some important bug fixes and more performance improvements for data formatting scripts. Files for download: JBrowse-1.10.5.zip – 4.6M file SHA1 17a07058a98900d2cff5d1db441ab3d2b5a425a1 JBrowse-1.10.5-dev.zip – 26M file SHA1 c060c487fcd361cc4b41075696cef6cfc005f150 Minor improvements Greatly improved the speed and reduced the … Continue reading

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JBrowse 1.10.4 maintenance release

JBrowse 1.10.4 has been released, with a new simple sequence-search track tool, large performance improvements for generate-names.pl, and some new filtering options for VCF-based variant tracks. Files for download: JBrowse-1.10.4.zip – 4.6M file SHA1 0cfc8106e0b89fcc937701be74830c30b9f894cc JBrowse-1.10.4-dev.zip – 26M file SHA1 9b4d7aa9c6cb702853e3080fd7dedfae32a095ca Minor … Continue reading

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JBrowse 1.10.3 maintenance release

JBrowse 1.10.3 has been released, with a lot of small enhancements and important bugfixes. Files for download: JBrowse-1.10.3.zip – 4.8M file SHA1 3be482df63ce10a9211483bc760d3b4137a2e77f JBrowse-1.10.3-dev.zip – 26M file SHA1 825093524bbf09f0f724f80332342b99f8e50734 Minor improvements Added options to Alignments, Alignments2, and SNPCoverage tracks to allow hiding … Continue reading

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