Category Archives: Software releases

JBrowse-1.12.3: Maintenance Release

We are happy to announce JBrowse 1.12.3 release!   This release includes a lot of improvements and bugfixes and we thank the community for the support. Some great new features include parsers for new file formats including 2bit format, which … Continue reading

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JBrowse-1.12.1: Maintenance Release

We are happy to announce JBrowse 1.12.1 release!   This is a maintenance release. JBrowse-1.12.1.zip – 4.9M file SHA1 bb917733f768744d703ab7b17b1f80040c055a78 JBrowse-1.12.1-dev.zip – 26M (development) file SHA1 737851bf52c0d537eb1c54b5a4b6a12d6736d2f0 Docker Image JBrowse-1.12.1-desktop-osx.zip – 48M (OSX 64bit) file SHA1 d766afe66ccb6eb754d1d329c097a447435d108b JBrowse-1.12.1-desktop-win.zip – 49M (Windows 32bit) file … Continue reading

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JBrowse-1.12.0: Open new genome from FASTA, in-line refseqs, NeatFeatures, Desktop

We are happy to announce JBrowse 1.12.0 release! This new release includes some exciting new features including the ability to load new genomes from FASTA and indexed FASTA formats; in-line refseqs, and server-free desktop applications for Windows and OSX (based … Continue reading

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JBrowse-1.11.6 maintenance release

I’m pleased to announce JBrowse 1.11.6 is now available! Everybody’s feedback, bug reports, pull requests, and feature requests have been invaluable for making this happen. This release includes new UI options for easily setting “Log scale” on wiggle tracks and … Continue reading

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JBrowse-1.11.5 maintenance release

A new JBrowse release has arrived! JBrowse 1.11.5 incorporates many valuable contributions and feedback from the community which has been overwhelmingly positive. Some notable bugs have been fixed, including a long-standing VCF file parsing bug, a scrolling bug that affected … Continue reading

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JBrowse-1.11.4 maintenance release

I am happy to announce the release of JBrowse 1.11.4. This is the first release after Rob’s leave, and it represents the great community effort to keep things going. There are some exciting new developments in this version, including high-resolution … Continue reading

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JBrowse 1.11.3 maintenance release

JBrowse 1.11.3 has been released, with quite a few improvements and bugfixes, including a new coloring scheme for BAM alignment tracks (Alignments2 tracks), a fix for some annoying bugs with the feature arrowheads, and some nice new configuration variables for … Continue reading

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JBrowse 1.11.2 maintenance release

JBrowse 1.11.2 has been released, with some new controls to adjust the size of quantitative tracks (thanks to Evan Briones at University of Arizona!), added support for the new text-based tracks.conf files to generate-names.pl, and quite a few other small … Continue reading

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JBrowse 1.11.1 maintenance release

JBrowse 1.11.1 has been released, with a number of bug fixes and some nice improvements to Alignments2 tracks. Most of the Alignments2 improvements were thought up by Keiran Raine at Sanger, thanks Keiran! Thanks also to Cris Lawrence and Richard … Continue reading

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JBrowse 1.11.0: hierarchical track selector, easier configuration, summary mode

JBrowse 1.11.0 is out today, with some major new features, and, as always, quite a lot of smaller bugfixes and improvements. But first, the download links: JBrowse-1.11.0.zip – 4.7M – installation quick-start tutorial file SHA1 49fb7be687c5dff7857d080bf8503cddedea4e51 JBrowse-1.11.0-dev.zip – 26M file SHA1 daa4de81cb11f3d1f0406887a1fbc06efdd44fff Firstly, JBrowse … Continue reading

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