Category Archives: News

JBrowse 1.15.0 release – CRAM support, CSI indexes, and on the desktop!

JBrowse 1.15.0 has been released! This is a really big one. At long last, JBrowse can open and view CRAM v2 and v3 files just like BAM. In fact, viewing CRAM files can sometimes be even faster than viewing BAM … Continue reading

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JBrowse 1.14.2 maintenance release

JBrowse 1.14.2 has been released! Files for download JBrowse-1.14.2.zip – 2.8M file SHA1 77c28aa4e00b93b1f1e72c5071aee77e7eaa7baa JBrowse-1.14.2-dev.zip – 7.5M file SHA1 63b8e0bd8f3ae1f67e6a2e88ce514507a2e756d9 Minor improvements Added a datasetSelectorWidth configuration key that sets the width of the dataset selector. The width defaults to 15em. Example setting … Continue reading

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JBrowse 1.14.0 release – iframe-less embedding, BigBed support

JBrowse 1.14.0 has been released! This release includes two major improvements, the first being that it’s no longer strictly necessary to run JBrowse inside an <iframe> when embedding it in another site or webpage. Big thanks to Lacey Sanderson for … Continue reading

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JBrowse 1.13.1 maintenance release

JBrowse 1.13.1 has been released! Files for download JBrowse-1.13.1.zip – 2.7M file SHA1 a22df76b7e970af9c7c6bda36ebdc4181344dbfd JBrowse-1.13.1-dev.zip – 6.4M file SHA1 686d04a3e0a07c70b62b8cd3ebe0741853971b03 Minor improvements Gene, ProcessedTranscript, and Segments glyphs can now render third-level subfeatures (such as stop_codon_read_through features) as simple boxes that draw on … Continue reading

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JBrowse 1.13.0 release – now with webpack!

I’m pleased to announce that JBrowse 1.13.0 has been released! There are actually not a huge number of new features in this release, but there has been a significant change in the way JBrowse is built behind the scenes, and … Continue reading

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JBrowse 1.12.5 maintenance release

JBrowse 1.12.5 has been released! Files for download JBrowse-1.12.5.zip – 5.7M file SHA19c98ff3939459253011fc3f1922a4de7fd48feda JBrowse-1.12.5-dev.zip – 30M file SHA1 97ab15f5ad5f3d29b2789e8cff077bf3a9684b86 Minor improvements Safari versions 10 and 11 will now see buttons for downloading feature FASTA sequences, as well as other sequences. These were … Continue reading

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JBrowse 1.12.4 maintenance release

JBrowse 1.12.4 has been released, with a great many improvements and bugfixes! Apologies for the long delay since the last release. One highlight of this release is that we have fixed a severe incompatibility that prevented many of the JBrowse … Continue reading

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JBrowse-1.12.3: Maintenance Release

We are happy to announce JBrowse 1.12.3 release!   This release includes a lot of improvements and bugfixes and we thank the community for the support. Some great new features include parsers for new file formats including 2bit format, which … Continue reading

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GSoC Students Do Cool JBrowse Projects

I’m pleased to introduce two Google Summer of Code students who are working actively on Jbrowse projects: Pubudu Dodangoda is working on a social commenting extension for gene features. Saksham Saxena is working a module to manage synthetic chromosomes through GitHub. Pubudu is … Continue reading

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JBrowse-1.12.1: Maintenance Release

We are happy to announce JBrowse 1.12.1 release!   This is a maintenance release. – 4.9M file SHA1 bb917733f768744d703ab7b17b1f80040c055a78 – 26M (development) file SHA1 737851bf52c0d537eb1c54b5a4b6a12d6736d2f0 Docker Image – 48M (OSX 64bit) file SHA1 d766afe66ccb6eb754d1d329c097a447435d108b – 49M (Windows 32bit) file SHA1 22613a35ff5eab9d4f9e151f6a153297fe21cb2d Minor improvements Update … Continue reading

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