Author Archives: Robert Buels

About Robert Buels

JBrowse Lead Developer

JBrowse 1.10.5 maintenance release

JBrowse 1.10.5 has been released, with some important bug fixes and more performance improvements for data formatting scripts. Files for download: JBrowse-1.10.5.zip – 4.6M file SHA1 17a07058a98900d2cff5d1db441ab3d2b5a425a1 JBrowse-1.10.5-dev.zip – 26M file SHA1 c060c487fcd361cc4b41075696cef6cfc005f150 Minor improvements Greatly improved the speed and reduced the … Continue reading

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JBrowse 1.10.4 maintenance release

JBrowse 1.10.4 has been released, with a new simple sequence-search track tool, large performance improvements for generate-names.pl, and some new filtering options for VCF-based variant tracks. Files for download: JBrowse-1.10.4.zip – 4.6M file SHA1 0cfc8106e0b89fcc937701be74830c30b9f894cc JBrowse-1.10.4-dev.zip – 26M file SHA1 9b4d7aa9c6cb702853e3080fd7dedfae32a095ca Minor … Continue reading

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JBrowse 1.10.3 maintenance release

JBrowse 1.10.3 has been released, with a lot of small enhancements and important bugfixes. Files for download: JBrowse-1.10.3.zip – 4.8M file SHA1 3be482df63ce10a9211483bc760d3b4137a2e77f JBrowse-1.10.3-dev.zip – 26M file SHA1 825093524bbf09f0f724f80332342b99f8e50734 Minor improvements Added options to Alignments, Alignments2, and SNPCoverage tracks to allow hiding … Continue reading

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JBrowse 1.10.2 maintenance release

JBrowse 1.10.2 has been released, with fixes for some minor issues, and some minor improvements to the CanvasFeatures track. Files for download: JBrowse-1.10.2.zip – 5.2M file SHA1 4e00586e070d8797a3598b405d3502906993c4e5 JBrowse-1.10.2-dev.zip – 26M file SHA1 8865724542fcbdec5de974273b27e0a10680156b Changes in this release: Added mouse-over ‘tooltips’ to … Continue reading

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JBrowse 1.10.1 maintenance release

JBrowse 1.10.1 has been released, with fixes for some minor issues and one major issue. Files for download: JBrowse-1.10.1.zip – 5.2M file SHA1 3677d10ba4ffd6ba604871dc11b1989131baff9f JBrowse-1.10.1-dev.zip – 26M file SHA1 f6a1a89d42498887ee0123ce2b98afea4478b6e0 Changes in this release: Added support in maker2jbrowse for user-defined source tags … Continue reading

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JBrowse 1.10.0: Combination tracks, better feature tracks, more glyphs, SPARQL support, and track pinning!

After a long, hard development push, JBrowse 1.10.0 is out today!  There are several major improvements in this release, and a huge number of smaller improvements and bugfixes. Download links JBrowse-1.10.0.zip – 5.2M – Includes everything you need to display your … Continue reading

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JBrowse 1.9.8 maintenance release

JBrowse 1.9.8 has been released, with fixes for some minor issues, a performance improvement when many HTML-based tracks are open, and a new yScalePosition configuration option for all tracks can can be set to “left”, “right”, or “center” to change … Continue reading

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About JBrowse version numbers

Just so everybody’s on the same page, I thought I should point out that from 1.2.0 onward, JBrowse version numbers follow a predictable scheme that encodes a bit of information about what is contained in a release. JBrowse version numbers … Continue reading

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JBrowse 1.9.7 maintenance release

JBrowse 1.9.7 has been released, with an important fix for a race condition that intermittently causes some NCList-based tracks to show the wrong genomic region when the browser is first started, and a fix for a bug in how JBrowse … Continue reading

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JBrowse 1.9.6 maintenance release

JBrowse 1.9.6 has been released, with a few more bug fixes and a new –workdir option for generate-names.pl. Files for download: JBrowse-1.9.6.zip – 5.1M file SHA1 2d09a47a57c314ed728ae49db9998a6780ad6609 JBrowse-1.9.6-dev.zip – 26M file SHA1 115abb36a78df4307c87d02b5093f88eb8f43f28 Changes in this release: Fixed a bug in which … Continue reading

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