Author Archives: Robert Buels

About Robert Buels

JBrowse Lead Developer

JBrowse 1.9.7 maintenance release

JBrowse 1.9.7 has been released, with an important fix for a race condition that intermittently causes some NCList-based tracks to show the wrong genomic region when the browser is first started, and a fix for a bug in how JBrowse … Continue reading

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JBrowse 1.9.6 maintenance release

JBrowse 1.9.6 has been released, with a few more bug fixes and a new –workdir option for generate-names.pl. Files for download: JBrowse-1.9.6.zip – 5.1M file SHA1 2d09a47a57c314ed728ae49db9998a6780ad6609 JBrowse-1.9.6-dev.zip – 26M file SHA1 115abb36a78df4307c87d02b5093f88eb8f43f28 Changes in this release: Fixed a bug in which … Continue reading

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JBrowse 1.9.5 maintenance release

JBrowse 1.9.5 has been released, with some small new features, and fixes for many small issues. Files for download: JBrowse-1.9.5.zip – 5.1M file SHA1 4972e99e345e0a31261dc0d14a15eb6a114aae7f JBrowse-1.9.5-dev.zip – 26M file SHA1 a388bb29210fea0deade3d8ea80985323f37c398 Changes in this release: Added a trackSelector.initialSortColumn configuration variable to the … Continue reading

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JBrowse 1.9.4 maintenance release

JBrowse 1.9.4 has been released, with fixes for a number of smaller issues present in the 1.9.3 release. Files for download: JBrowse-1.9.4.zip – 5.0M file SHA1 35d5b1a7b0d6ac5eec90d3d786ea62158cceca67 JBrowse-1.9.4-dev.zip – 26M file SHA1 56a6ab1585794987017b70069aa4ff32b2ed28ca Changes in this release: Fixed a bug with configuration … Continue reading

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JBrowse 1.9.3 maintenance release

JBrowse 1.9.3 has been released, with fixes for a number of smaller issues present in the 1.9.2 release. Files for download: JBrowse-1.9.3.zip – 5.0M file SHA1 b7a0d23430b1c6d0504322136bcc2f5b0329bc9d JBrowse-1.9.3-dev.zip – 28.6M file SHA1 a928cbb654e2cfefb87535c05f281965d5f3f5d4 Changes in this release: Fixed a bug in VCF … Continue reading

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JBrowse 1.9.2 maintenance release

JBrowse 1.9.2 has been released, with fixes for a number of smaller issues present in the 1.9.1 release. Files for download: JBrowse-1.9.2.zip – 5.0M file SHA1 ad3f510021eebbc8e0e5f6e4cfb6f2def1a63400 JBrowse-1.9.2-dev.zip – 28.6M file SHA1 91eec960ffb89a9496fe670b7512b3ccb1ece587 Changes in this release: Fixed bug in which JBrowse … Continue reading

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JBrowse 1.9.1 maintenance release

JBrowse 1.9.1 has been released, with performance improvements in both BAM and VCF tracks, and lots of smaller fixes and improvements. Files for download: JBrowse-1.9.1.zip – 5.0M file SHA1 1dc089e42e626da5312a8091dbcd1972a1cfb0fd JBrowse-1.9.1-dev.zip – 28.6M file SHA1 bc5bb43ad8b71a9190e8c2a400d7db2364882e09 Changes in this release: Significant speed … Continue reading

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JBrowse 1.9.0: VCF support, dataset switching, wiggle track dynamic scaling, REST backend

JBrowse 1.9.0 is out today, with some great new features, and lots of smaller improvements and bug fixes. Download links: JBrowse-1.9.0.zip – 5.0M – Includes everything you need to display your data on the web with JBrowse, optimized for fast loading speed. … Continue reading

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JBrowse 1.8.1 bugfix release

JBrowse 1.8.1 has been released, with several small fixes and additional features, mostly related to displaying features on peptide sequences. Files for download: JBrowse-1.8.1.zip – 3.3M JBrowse-1.8.1-dev.zip – 28.6M Changes in this release: Added support for cigarAttribute and mdAttributes configuration variables to … Continue reading

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JBrowse 1.8.0: opens local files, new BAM track types, new plugin system

JBrowse 1.8.0 is finally here, with some great new features, and lots of smaller improvements. Download links: JBrowse-1.8.0.zip – 3.3M – Includes everything you need to display your data on the web with JBrowse, optimized for fast loading speed. JBrowse-1.8.0-dev.zip – 28M … Continue reading

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