Author Archives: Robert Buels

About Robert Buels

JBrowse Lead Developer

JBrowse 1.9.6 maintenance release

JBrowse 1.9.6 has been released, with a few more bug fixes and a new –workdir option for generate-names.pl. Files for download: JBrowse-1.9.6.zip – 5.1M file SHA1 2d09a47a57c314ed728ae49db9998a6780ad6609 JBrowse-1.9.6-dev.zip – 26M file SHA1 115abb36a78df4307c87d02b5093f88eb8f43f28 Changes in this release: Fixed a bug in which … Continue reading

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JBrowse 1.9.5 maintenance release

JBrowse 1.9.5 has been released, with some small new features, and fixes for many small issues. Files for download: JBrowse-1.9.5.zip – 5.1M file SHA1 4972e99e345e0a31261dc0d14a15eb6a114aae7f JBrowse-1.9.5-dev.zip – 26M file SHA1 a388bb29210fea0deade3d8ea80985323f37c398 Changes in this release: Added a trackSelector.initialSortColumn configuration variable to the … Continue reading

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JBrowse 1.9.4 maintenance release

JBrowse 1.9.4 has been released, with fixes for a number of smaller issues present in the 1.9.3 release. Files for download: JBrowse-1.9.4.zip – 5.0M file SHA1 35d5b1a7b0d6ac5eec90d3d786ea62158cceca67 JBrowse-1.9.4-dev.zip – 26M file SHA1 56a6ab1585794987017b70069aa4ff32b2ed28ca Changes in this release: Fixed a bug with configuration … Continue reading

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JBrowse 1.9.3 maintenance release

JBrowse 1.9.3 has been released, with fixes for a number of smaller issues present in the 1.9.2 release. Files for download: JBrowse-1.9.3.zip – 5.0M file SHA1 b7a0d23430b1c6d0504322136bcc2f5b0329bc9d JBrowse-1.9.3-dev.zip – 28.6M file SHA1 a928cbb654e2cfefb87535c05f281965d5f3f5d4 Changes in this release: Fixed a bug in VCF … Continue reading

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JBrowse 1.9.2 maintenance release

JBrowse 1.9.2 has been released, with fixes for a number of smaller issues present in the 1.9.1 release. Files for download: JBrowse-1.9.2.zip – 5.0M file SHA1 ad3f510021eebbc8e0e5f6e4cfb6f2def1a63400 JBrowse-1.9.2-dev.zip – 28.6M file SHA1 91eec960ffb89a9496fe670b7512b3ccb1ece587 Changes in this release: Fixed bug in which JBrowse … Continue reading

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JBrowse 1.9.1 maintenance release

JBrowse 1.9.1 has been released, with performance improvements in both BAM and VCF tracks, and lots of smaller fixes and improvements. Files for download: JBrowse-1.9.1.zip – 5.0M file SHA1 1dc089e42e626da5312a8091dbcd1972a1cfb0fd JBrowse-1.9.1-dev.zip – 28.6M file SHA1 bc5bb43ad8b71a9190e8c2a400d7db2364882e09 Changes in this release: Significant speed … Continue reading

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JBrowse 1.9.0: VCF support, dataset switching, wiggle track dynamic scaling, REST backend

JBrowse 1.9.0 is out today, with some great new features, and lots of smaller improvements and bug fixes. Download links: JBrowse-1.9.0.zip – 5.0M – Includes everything you need to display your data on the web with JBrowse, optimized for fast loading speed. … Continue reading

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JBrowse 1.8.1 bugfix release

JBrowse 1.8.1 has been released, with several small fixes and additional features, mostly related to displaying features on peptide sequences. Files for download: JBrowse-1.8.1.zip – 3.3M JBrowse-1.8.1-dev.zip – 28.6M Changes in this release: Added support for cigarAttribute and mdAttributes configuration variables to … Continue reading

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JBrowse 1.8.0: opens local files, new BAM track types, new plugin system

JBrowse 1.8.0 is finally here, with some great new features, and lots of smaller improvements. Download links: JBrowse-1.8.0.zip – 3.3M – Includes everything you need to display your data on the web with JBrowse, optimized for fast loading speed. JBrowse-1.8.0-dev.zip – 28M … Continue reading

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JBrowse 1.7.6 bugfix release

JBrowse 1.7.6 has been released, containing a fix for yet another bug that prevented display of certain kinds of BAM files. The rate of bug reports for BAM support is tailing off, and it’s starting to look pretty solid. Thanks … Continue reading

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