Author Archives: Robert Buels

About Robert Buels

JBrowse Lead Developer

JBrowse 1.11.3 maintenance release

JBrowse 1.11.3 has been released, with quite a few improvements and bugfixes, including a new coloring scheme for BAM alignment tracks (Alignments2 tracks), a fix for some annoying bugs with the feature arrowheads, and some nice new configuration variables for … Continue reading

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JBrowse 1.11.2 maintenance release

JBrowse 1.11.2 has been released, with some new controls to adjust the size of quantitative tracks (thanks to Evan Briones at University of Arizona!), added support for the new text-based tracks.conf files to generate-names.pl, and quite a few other small … Continue reading

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JBrowse 1.11.1 maintenance release

JBrowse 1.11.1 has been released, with a number of bug fixes and some nice improvements to Alignments2 tracks. Most of the Alignments2 improvements were thought up by Keiran Raine at Sanger, thanks Keiran! Thanks also to Cris Lawrence and Richard … Continue reading

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JBrowse 1.11.0: hierarchical track selector, easier configuration, summary mode

JBrowse 1.11.0 is out today, with some major new features, and, as always, quite a lot of smaller bugfixes and improvements. But first, the download links: JBrowse-1.11.0.zip – 4.7M – installation quick-start tutorial file SHA1 49fb7be687c5dff7857d080bf8503cddedea4e51 JBrowse-1.11.0-dev.zip – 26M file SHA1 daa4de81cb11f3d1f0406887a1fbc06efdd44fff Firstly, JBrowse … Continue reading

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JBrowse 1.10.12 maintenance release (please upgrade!)

JBrowse 1.10.12 has been released, and we are asking all users of JBrowse 1.10.7 1.10.10 and higher to please upgrade to this release as soon as possible. The story behind this is a bit embarassing: I discovered today that JBrowse releases … Continue reading

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JBrowse 1.10.11 maintenance release

JBrowse 1.10.11 has been released, with many bug fixes and better support for spliced alignments in SNPCoverage tracks. (Download disabled.  Please download the 1.10.12 release or later instead.) Minor improvements Made the sequence track’s “zoom in to see sequence” placeholder … Continue reading

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JBrowse 1.10.10 maintenance release

JBrowse 1.10.10 has been released, with new compression support in generate-names.pl, configurable inter-track spacing, and quite a few bug fixes. (Download disabled.  Please download the 1.10.12 release or later instead.) Minor improvements Spacing between tracks is now configurable by setting … Continue reading

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JBrowse 1.10.9 maintenance release

JBrowse 1.10.9 has been released, with new incremental-updating support in generate-names.pl, along with some other bug fixes and small improvements. Files for download: JBrowse-1.10.9.zip – 4.6M file SHA1 e05f599c8692489e7c184cfd6c340afc79519a38 JBrowse-1.10.9-dev.zip – 26M file SHA1 e74d9b8ab21aa31e9ce09ff996ec45916b934821 Minor improvements generate-names.pl now supports a –incremental … Continue reading

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JBrowse 1.10.8 maintenance release

JBrowse 1.10.8 has been released, with an important bugfix for generate-names.pl, better REST data store feature caching, and more. Files for download: JBrowse-1.10.8.zip – 4.6M file SHA1 c6161ee7814dbc02878cdf642ab62b82bc61dbab JBrowse-1.10.8-dev.zip – 26M file SHA1 0b288a98220159c5c97f6ea3bd8eb5b987cc4087 Minor improvements Added a new navigateTo action usable … Continue reading

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JBrowse 1.10.7 maintenance release

JBrowse 1.10.7 has been released, with some important bug fixes and added support for displaying feature density histograms from REST stores. Files for download: JBrowse-1.10.7.zip – 4.6M file SHA1 105e24540994b9018191cb3b5103fb62dc285c67 JBrowse-1.10.7-dev.zip – 26M file SHA1 29d6cd66275536dade330d4016b74c419f704a9a Minor improvements Added an optional stats/regionFeatureDensities … Continue reading

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