The JBrowse genome browser

Demos:

• Drosophila melanogaster genome
• Homo sapiens -- hg19 sequence and (most) annotation tracks from UCSC
• TWiki plugin -- a rudimentary "genome wiki"

Code & distributions:

• GitHub -- source code
• Amazon Machine Image -- ready to deploy on EC2

Documentation

• Basic server setup, using the included test data
• Configuration file reference
• API documentation
• D. melanogaster demo config file

Project wiki:

• biowiki.org -- JBrowse wiki
• More detailed tutorial -- how to set up the JBrowse server
• TWiki Plugin -- set up JBrowse + TWiki (experimental!)

Feature request & bug tracking:

• Lighthouse

Mailing list:

• gmod-ajax @ Sourceforge

Contact:

If you email us with questions about how to use JBrowse, we will probably discuss them on the mailing list unless you specifically ask us not to.

Presentations:

• GMOD Meeting (Jan 2009) slides
• GMOD Meeting (Jul 2008) slides
• BOSC 2007 slides, HTML-rendering browser demo

Original prototype:

• TiledImage client and server code at SourceForge
• Demo